Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 109998873 | . | G | A | CCDS9131.1:NM_052845.3:c.556Cgg>Tgg_NP_443077.1:p.186R>W | Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2idx | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2007-02-06 | ARG | A:132 | A:186 | 58.0 | 0.258 | H | -56.8 | -48.4 | 45.0 | 0.2 | 0.058 |
C:Q96EY8:0.058 |
MG MG ATP HOH |
6.264 5.858 5.440 2.799 |
NH1 NH1 NH1 NH2 |
MG MG O2A O |
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ARG | B:132 | B:186 | 57.0 | 0.253 | H | -59.4 | -44.3 | 56.0 | 0.249 | 0.004 |
A:Q96EY8:0.004 |
HOH |
2.499 |
NH1 |
O |
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ARG | C:132 | C:186 | 58.0 | 0.258 | H | -57.0 | -42.4 | 44.0 | 0.196 | 0.062 |
B:Q96EY8:0.062 |
MG ATP MG HOH |
5.566 5.690 6.824 3.187 |
NH1 NH1 NH1 NE |
MG O2A MG O |
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6d5k | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2018-10-10 | ARG | A:132 | A:186 | 63.0 | 0.28 | H | -57.2 | -51.4 | 31.0 | 0.138 | 0.142 |
C:Q96EY8:0.142 |
5AD B12 EPE |
7.421 2.859 9.163 |
O NE NE |
N6 O39 O1S |
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ARG | B:132 | B:186 | 56.0 | 0.249 | H | -66.2 | -42.0 | 27.0 | 0.12 | 0.129 |
A:Q96EY8:0.129 |
B12 5AD HOH |
2.880 7.189 7.132 |
CD O O |
O39 N6 O |
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ARG | C:132 | C:186 | 65.0 | 0.289 | H | -56.1 | -48.0 | 44.0 | 0.196 | 0.093 |
B:Q96EY8:0.093 |
ATP MG MG HOH |
5.309 5.423 6.704 3.117 |
NH2 NH2 NH2 NH2 |
O1A MG MG O |
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6d5x | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2018-10-10 | ARG | A:132 | A:186 | 53.0 | 0.236 | H | -60.9 | -44.5 | 23.0 | 0.102 | 0.134 |
C:Q96EY8:0.133 |
5AD B12 MG 3PO HOH |
7.372 2.880 8.722 7.732 5.337 |
O NH2 CG NH2 O |
N6 O39 MG O1G O |
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ARG | B:132 | B:186 | 53.0 | 0.236 | H | -62.6 | -39.8 | 25.0 | 0.111 | 0.125 |
A:Q96EY8:0.124 |
5AD B12 HOH |
7.027 3.002 4.642 |
O CD NH1 |
N6 O39 O |
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ARG | C:132 | C:186 | 63.0 | 0.28 | H | -62.5 | -39.1 | 43.0 | 0.191 | 0.089 |
B:Q96EY8:0.089 |
ATP MG MG HOH |
5.597 5.845 6.686 2.916 |
NH2 NH2 NH2 NH2 |
O5' MG MG O |
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7ruv | 1 | Q96EY8 | 98.98 | 2e-144 |
X-RAY |
2021-11-24 | ARG | A:132 | A:186 | 51.0 | 0.227 | H | -60.3 | -48.7 | 22.0 | 0.098 | 0.129 |
A:Q96EY8:0.129 |
B12 5AD HOH |
2.801 7.366 4.708 |
NH2 O NH2 |
O39 N6 O |
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ARG | B:132 | B:186 | 54.0 | 0.24 | H | -63.7 | -44.9 | NA | NA | NA | |||||||||||||
ARG | C:132 | C:186 | 52.0 | 0.231 | H | -59.5 | -46.9 | NA | NA | NA | |||||||||||||
ARG | D:132 | D:186 | 48.0 | 0.213 | H | -58.7 | -50.9 | NA | NA | NA | |||||||||||||
7rut | 1 | Q96EY8 | 98.98 | 2e-143 |
X-RAY |
2021-11-24 | ARG | A:132 | E:186 | 59.0 | 0.262 | H | -57.8 | -44.8 | 30.0 | 0.133 | 0.129 |
E:Q96EY8:0.129 |
GOL MG K ATP HOH |
4.588 8.914 9.118 7.243 2.845 |
CD CG CD O NH1 |
O2 MG K N6 O |
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ARG | B:132 | C:186 | 61.0 | 0.271 | H | -58.3 | -44.6 | NA | NA | NA | |||||||||||||
ARG | C:132 | F:186 | 60.0 | 0.267 | H | -57.2 | -46.8 | NA | NA | NA | |||||||||||||
ARG | D:132 | B:186 | 59.0 | 0.262 | H | -56.8 | -46.9 | NA | NA | NA | |||||||||||||
ARG | E:132 | A:186 | 63.0 | 0.28 | H | -56.7 | -47.0 | NA | NA | NA | |||||||||||||
ARG | F:132 | D:186 | 61.0 | 0.271 | H | -58.2 | -46.8 | 30.0 | 0.133 | 0.138 |
A:Q96EY8:0.138 |
MG ATP MG K HOH |
7.183 7.285 8.819 9.049 3.091 |
CD O CG CD NH1 |
MG N6 MG K O |
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7ruu | 1 | Q96EY8 | 98.98 | 2e-143 |
X-RAY |
2021-11-24 | ARG | A:132 | A:186 | 62.0 | 0.276 | H | -58.2 | -47.1 | 28.0 | 0.124 | 0.152 |
A:Q96EY8:0.151 |
5AD B12 HOH |
7.262 3.003 4.131 |
O NH2 NH1 |
N6 O39 O |
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ARG | B:132 | B:186 | 62.0 | 0.276 | H | -56.8 | -47.6 | NA | NA | NA | |||||||||||||
ARG | C:132 | C:186 | 63.0 | 0.28 | H | -57.9 | -46.7 | NA | NA | NA | |||||||||||||
ARG | D:132 | D:186 | 63.0 | 0.28 | H | -60.0 | -45.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q96ey8-f1 | 1 | Q96EY8 | 100.0 | 0.0 | ARG | A:186 | A:186 | 58.0 | 0.258 | H | -57.2 | -41.7 |