Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 109999277 | . | C | A | CCDS9131.1:NM_052845.3:c.467tGg>tTg_NP_443077.1:p.156W>L | Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2idx | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2007-02-06 | TRP | A:102 | A:156 | 25.0 | 0.098 | H | -64.0 | -41.0 | 25.0 | 0.098 | 0.0 |
SO4 HOH |
9.028 8.255 |
O C |
O4 O |
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TRP | B:102 | B:156 | 14.0 | 0.055 | H | -59.3 | -42.3 | 14.0 | 0.055 | 0.0 |
SO4 HOH |
9.075 3.166 |
O NE1 |
O3 O |
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TRP | C:102 | C:156 | 23.0 | 0.09 | H | -60.6 | -43.8 | 23.0 | 0.09 | 0.0 |
SO4 HOH |
9.419 3.255 |
O NE1 |
O4 O |
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6d5k | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2018-10-10 | TRP | A:102 | A:156 | 22.0 | 0.086 | H | -59.5 | -39.9 | 22.0 | 0.086 | 0.0 |
SO4 |
9.341 |
CD1 |
O2 |
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TRP | B:102 | B:156 | 27.0 | 0.106 | H | -63.0 | -39.0 | 27.0 | 0.106 | 0.0 |
SO4 |
9.160 |
O |
O2 |
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TRP | C:102 | C:156 | 15.0 | 0.059 | H | -60.3 | -39.9 | 15.0 | 0.059 | 0.0 |
SO4 |
9.785 |
O |
O1 |
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6d5x | 1 | Q96EY8 | 99.49 | 4e-145 |
X-RAY |
2018-10-10 | TRP | A:102 | A:156 | 34.0 | 0.133 | H | -62.8 | -40.3 | 34.0 | 0.133 | 0.0 |
SO4 HOH |
9.122 4.318 |
O CZ3 |
O2 O |
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TRP | B:102 | B:156 | 17.0 | 0.067 | H | -62.9 | -38.2 | 17.0 | 0.067 | 0.0 |
SO4 HOH |
9.198 3.077 |
O NE1 |
O2 O |
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TRP | C:102 | C:156 | 12.0 | 0.047 | H | -62.8 | -40.4 | 12.0 | 0.047 | 0.0 |
SO4 HOH |
9.843 4.712 |
O CH2 |
O1 O |
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7ruv | 1 | Q96EY8 | 98.98 | 2e-144 |
X-RAY |
2021-11-24 | TRP | A:102 | A:156 | 21.0 | 0.082 | H | -66.3 | -38.8 | 21.0 | 0.082 | 0.0 |
HOH |
4.105 |
NE1 |
O |
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TRP | B:102 | B:156 | 32.0 | 0.125 | H | -59.2 | -42.5 | NA | NA | NA | |||||||||||||
TRP | C:102 | C:156 | 35.0 | 0.137 | H | -67.7 | -42.5 | NA | NA | NA | |||||||||||||
TRP | D:102 | D:156 | 32.0 | 0.125 | H | -67.1 | -39.5 | NA | NA | NA | |||||||||||||
7rut | 1 | Q96EY8 | 98.98 | 2e-143 |
X-RAY |
2021-11-24 | TRP | A:102 | E:156 | 29.0 | 0.114 | H | -68.3 | -44.9 | 29.0 | 0.114 | 0.0 |
HOH |
3.609 |
NE1 |
O |
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TRP | B:102 | C:156 | 29.0 | 0.114 | H | -67.5 | -41.9 | NA | NA | NA | |||||||||||||
TRP | C:102 | F:156 | 41.0 | 0.161 | H | -67.3 | -43.5 | NA | NA | NA | |||||||||||||
TRP | D:102 | B:156 | 34.0 | 0.133 | H | -69.6 | -42.6 | NA | NA | NA | |||||||||||||
TRP | E:102 | A:156 | 29.0 | 0.114 | H | -68.6 | -42.2 | NA | NA | NA | |||||||||||||
TRP | F:102 | D:156 | 26.0 | 0.102 | H | -67.6 | -42.3 | 26.0 | 0.102 | 0.0 |
HOH |
2.748 |
NE1 |
O |
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7ruu | 1 | Q96EY8 | 98.98 | 2e-143 |
X-RAY |
2021-11-24 | TRP | A:102 | A:156 | 34.0 | 0.133 | H | -66.1 | -39.5 | 34.0 | 0.133 | 0.0 |
ACT HOH |
3.820 3.400 |
CZ3 CD1 |
OXT O |
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TRP | B:102 | B:156 | 23.0 | 0.09 | H | -64.1 | -39.5 | NA | NA | NA | |||||||||||||
TRP | C:102 | C:156 | 32.0 | 0.125 | H | -65.4 | -39.6 | NA | NA | NA | |||||||||||||
TRP | D:102 | D:156 | 33.0 | 0.129 | H | -64.7 | -38.5 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q96ey8-f1 | 1 | Q96EY8 | 100.0 | 0.0 | TRP | A:156 | A:156 | 27.0 | 0.106 | H | -70.7 | -39.1 |