Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013787 . G A CCDS41841.1:NM_001085481.1:c.40Gaa>Aaa_NP_001078950.1:p.14E>K Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 GLU A:14 B:14 134.0 0.705 H -64.3 -42.1 134.0 0.705 0.0 HOH
 4.934
 O
 O
GLU C:14 A:14 125.0 0.658 H -75.6 -38.7 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 GLU A:19 A:14 136.0 0.716 H -62.0 -42.4 136.0 0.716 0.0 HOH
 2.733
 O
 O
GLU C:19 C:14 137.0 0.721 H -61.6 -41.2 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 GLU A:19 A:14 138.0 0.726 H -63.9 -34.4 138.0 0.726 0.0 HOH
 2.753
 OE1
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 GLU A:24 A:14 141.0 0.742 H -64.7 -36.9 141.0 0.742 0.0 HOH
 2.535
 OE1
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 GLU A:14 A:14 136.0 0.716 H -65.7 -46.2 136.0 0.716 0.0
GLU B:14 B:14 140.0 0.737 H -61.1 -41.4 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 GLU A:14 A:14 73.0 NA H -54.5 -42.1 73.0 NA NA
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 GLU A:14 A:14 156.0 0.821 H -59.2 -43.4 156.0 0.821 0.0 HOH
 2.698
 O
 O
GLU B:14 B:14 68.0 NA H -63.9 -43.3 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 GLU A:14 A:14 139.0 0.732 H -64.7 -34.4 139.0 0.732 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 GLU B:19 B:14 139.0 0.732 H -58.2 -38.7 139.0 0.732 0.0 HOH
 2.565
 OE2
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 GLU B:19 B:14 140.0 0.737 H -61.9 -37.1 140.0 0.737 0.0 HOH
 2.648
 O
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 GLU A:14 A:14 160.0 0.842 H -70.0 -29.0 160.0 0.842 0.0 HOH
 2.607
 OE1
 O
GLU B:14 B:14 128.0 0.674 H -60.1 -43.4 NA NA NA
GLU C:14 C:14 143.0 0.753 H -60.5 -44.4 NA NA NA
GLU D:14 D:14 159.0 0.837 H -67.0 -33.2 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 GLU A:13 A:14 98.0 0.516 H -67.8 -39.5 98.0 0.516 0.0 HOH
 2.655
 OE1
 O
GLU B:13 B:14 151.0 0.795 H -66.5 -36.8 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 GLU A:15 A:14 155.0 0.816 H -43.7 -43.4 155.0 0.816 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 GLU A:24 A:14 147.0 0.774 H -68.6 -30.8 147.0 0.774 0.0 HOH
 2.552
 O
 O
GLU B:24 B:14 137.0 0.721 H -63.0 -38.4 137.0 0.721 0.0 HOH
 2.614
 OE1
 O
GLU C:24 C:14 159.0 0.837 H -65.0 -35.3 141.0 0.742 0.095 A:Q9GZQ8:0.095
 HOH
 2.520
 OE1
 O
GLU D:24 D:14 151.0 0.795 H -57.1 -45.8 151.0 0.795 0.0 HOH
 2.672
 OE1
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 GLU A:36 A:12 157.0 0.826 H -72.7 -36.2 157.0 0.826 0.0 HOH
 3.233
 N
 O
GLU B:36 B:12 157.0 0.826 H -73.4 -35.4 70.0 0.368 0.458 C:Q9GZQ8:0.458
 HOH
 3.246
 CB
 O
GLU C:36 C:12 134.0 0.705 H -72.7 -34.3 88.0 0.463 0.242 D:Q9GZQ8:0.242
 HOH
 2.021
 OE2
 O
GLU D:36 D:12 130.0 0.684 T -145.2 -39.3 127.0 0.668 0.016 C:Q9GZQ8:0.016
 HOH
 3.144
 OE2
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 GLU A:19 A:14 152.0 0.8 H -60.0 -42.9 152.0 0.8 0.0 HOH
 2.914
 N
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 GLU B:19 B:14 137.0 0.721 H -59.4 -40.5 137.0 0.721 0.0 HOH
 2.680
 O
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 GLU B:19 B:14 155.0 0.816 H -55.4 -48.9 155.0 0.816 0.0 HOH
 7.402
 N
 O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 GLU A:27 A:1014 130.0 0.684 H -67.4 -33.8 130.0 0.684 0.0 HOH
 4.128
 CB
 O
GLU B:27 B:1014 133.0 0.7 H -63.5 -35.5 133.0 0.7 0.0 HOH
 4.096
 CB
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 GLU A:44 A:29 141.0 0.742 H -44.3 -44.2 141.0 0.742 0.0 SO4
HOH
 7.115
8.627
 N
N
 O4
O
GLU B:44 B:29 134.0 0.705 H -69.5 -44.4 NA NA NA
GLU C:44 C:29 107.0 0.563 H -60.7 -45.3 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 GLU A:29 A:30 120.0 0.632 H -92.9 -44.1 120.0 0.632 0.0
GLU B:29 B:30 127.0 0.668 H -55.2 -61.5 NA NA NA
GLU C:29 C:30 118.0 0.621 H -67.2 -22.9 NA NA NA
GLU D:29 D:30 134.0 0.705 H -54.2 -25.4 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 GLU A:29 A:41 133.0 0.7 H -60.9 -36.6 133.0 0.7 0.0 HOH
 2.852
 OE1
 O
GLU B:29 B:41 121.0 0.637 H -66.1 -35.3 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 GLU A:18 A:18 134.0 0.705 H -72.8 -29.2 134.0 0.705 0.0 SO4
SO4
HOH
 9.315
6.606
2.296
 C
N
OE1
 O1
O2
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 GLU A:18 A:18 119.0 0.626 H -64.1 -42.0 119.0 0.626 0.0 SO4
HOH
 6.651
2.633
 N
OE2
 O1
O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 GLU A:21 A:14 155.0 0.816 H -65.6 -40.2 155.0 0.816 0.0 HOH
 2.285
 OE1
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 GLU A:29 A:30 128.0 0.674 H -64.8 -31.6 128.0 0.674 0.0 HOH
 4.246
 CB
 O
GLU B:29 B:30 131.0 0.689 H -76.7 -25.8 131.0 0.689 0.0 HOH
 4.205
 CB
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 GLU A:29 A:29 132.0 0.695 H -57.4 -37.4 132.0 0.695 0.0 HOH
 2.509
 OE1
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 GLU A:32 A:14 134.0 0.705 H -67.6 -33.1 134.0 0.705 0.0 HOH
 2.669
 O
 O
GLU B:32 B:14 130.0 0.684 H -66.6 -33.6 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 GLU A:32 A:14 129.0 0.679 H -66.1 -34.0 129.0 0.679 0.0 HOH
 2.827
 N
 O
GLU B:32 B:14 127.0 0.668 H -65.0 -33.9 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 GLU A:14 A:14 135.0 0.711 H -57.8 -53.2 135.0 0.711 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 GLU B:11 C:14 139.0 0.732 H -62.6 -38.9 139.0 0.732 0.0
GLU C:11 D:14 136.0 0.716 H -63.0 -38.7 136.0 0.716 0.0
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ALA A:16 A:14 51.0 0.443 H -59.6 -43.1 51.0 0.443 0.0 HOH
 3.233
 N
 O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ALA A:16 A:14 55.0 0.478 H -62.2 -40.8 55.0 0.478 0.0 HOH
 2.901
 N
 O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ALA A:16 A:14 52.0 0.452 H -60.2 -41.0 52.0 0.452 0.0 HOH
 2.856
 N
 O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 ALA A:14 A:14 64.0 0.557 H -55.5 -45.8 64.0 0.557 0.0 GOL
HOH
 7.284
4.849
 O
O
 O1
O
ALA B:14 B:14 66.0 0.574 H -55.5 -47.8 NA NA NA
ALA C:14 C:14 65.0 0.565 H -56.8 -46.0 65.0 0.565 0.0 HOH
 6.953
 O
 O
ALA D:14 D:14 55.0 0.478 H -56.0 -46.2 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 ALA A:15 A:14 71.0 0.617 H -61.6 -53.4 71.0 0.617 0.0
ALA B:15 B:14 72.0 0.626 H -68.5 -35.1 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 ALA A:18 A:18 56.0 0.487 H -59.3 -42.4 56.0 0.487 0.0 MLT
HOH
 6.632
2.794
 N
O
 O1
O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 ALA A:29 A:30 62.0 0.539 H -61.2 -40.5 62.0 0.539 0.0 MPD
HOH
 9.655
2.779
 N
O
 C5
O
ALA B:29 B:30 72.0 0.626 H -51.6 -46.3 72.0 0.626 0.0 HOH
 2.534
 O
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 ALA A:29 A:25 52.0 0.452 H -65.5 -44.8 52.0 0.452 0.0
ALA B:29 B:25 49.0 0.426 H -64.6 -46.9 NA NA NA
ALA C:29 C:25 52.0 0.452 H -64.7 -45.4 NA NA NA
ALA D:29 D:25 49.0 0.426 H -66.7 -44.3 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 ALA A:26 A:14 67.0 0.583 H -55.7 -47.1 67.0 0.583 0.0 HOH
 3.031
 N
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 ALA A:14 A:18 64.0 0.557 H -58.6 -48.1 64.0 0.557 0.0 EDO
HOH
 7.582
5.069
 N
O
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 GLU A:14 A:14 128.0 0.674 H -62.9 -40.6
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 GLU A:14 A:14 125.0 0.658 H -62.6 -40.5
af-q9h492-f1 1 Q9H492 80.99 5e-71 ALA A:14 A:14 66.0 0.574 H -59.1 -41.5