Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013811 . C A CCDS41841.1:NM_001085481.1:c.64Ctt>Att_NP_001078950.1:p.22L>I Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 LEU A:22 B:22 78.0 0.459 H -68.0 -48.7 78.0 0.459 0.0 HOH
 2.980
 O
 O
LEU C:22 A:22 74.0 0.435 H -67.1 -42.8 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 LEU A:27 A:22 87.0 0.512 H -66.3 -44.5 87.0 0.512 0.0 HOH
 2.929
 O
 O
LEU C:27 C:22 59.0 0.347 H -67.4 -42.3 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 LEU A:27 A:22 59.0 0.347 H -65.7 -42.0 59.0 0.347 0.0 HOH
 3.409
 CD2
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 LEU A:32 A:22 57.0 0.335 H -68.1 -45.6 57.0 0.335 0.0 HOH
 2.541
 HD11
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 LEU A:22 A:22 74.0 0.435 H -77.4 -48.2 74.0 0.435 0.0 HOH
 9.624
 O
 O
LEU B:22 B:22 65.0 0.382 H -58.4 -50.4 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 LEU A:22 A:22 103.0 0.606 H -59.0 -47.3 103.0 0.606 0.0 ZN
HOH
 6.998
7.801
 O
O
 ZN
O
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 LEU A:22 A:22 81.0 0.476 H -62.1 -43.3 81.0 0.476 0.0 HOH
 6.184
 N
 O
LEU B:22 B:22 97.0 0.571 H -56.9 -50.6 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 LEU A:22 A:22 105.0 0.618 H -61.4 -45.4 80.0 0.471 0.147 B:Q8IVP5:0.147
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 LEU B:27 B:22 47.0 0.276 H -60.3 -52.1 47.0 0.276 0.0 HOH
 4.600
 N
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 LEU B:27 B:22 66.0 0.388 H -64.4 -52.0 66.0 0.388 0.0 HOH
 4.250
 CD2
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 LEU A:22 A:22 72.0 0.424 H -65.5 -36.8 72.0 0.424 0.0 HOH
 5.855
 N
 O
LEU B:22 B:22 85.0 0.5 H -73.1 -41.1 NA NA NA
LEU C:22 C:22 60.0 0.353 H -62.2 -42.1 NA NA NA
LEU D:22 D:22 72.0 0.424 H -62.8 -37.5 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 LEU A:21 A:22 99.0 0.582 H -66.6 -42.6 99.0 0.582 0.0 HOH
 4.028
 N
 O
LEU B:21 B:22 80.0 0.471 H -67.6 -43.7 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 LEU A:23 A:22 67.0 0.394 H -54.7 -55.9 42.0 0.247 0.147 B:O08623:0.147
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 LEU A:32 A:22 70.0 0.412 H -74.7 -42.5 70.0 0.412 0.0 HOH
 4.829
 CD2
 O
LEU B:32 B:22 57.0 0.335 H -67.2 -47.8 57.0 0.335 0.0 HOH
 3.715
 O
 O
LEU C:32 C:22 68.0 0.4 H -64.6 -46.4 29.0 0.171 0.229 A:Q9GZQ8:0.224
B:Q9GZQ8:0.047
 HOH
 4.409
 CD1
 O
LEU D:32 D:22 61.0 0.359 H -62.5 -41.7 61.0 0.359 0.0 HOH
 3.943
 CD2
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 LEU A:44 A:20 57.0 0.335 H -69.0 -45.2 57.0 0.335 0.0 HOH
 3.798
 CB
 O
LEU B:44 B:20 78.0 0.459 H -69.1 -43.1 78.0 0.459 0.0 HOH
 6.299
 C
 O
LEU C:44 C:20 107.0 0.629 H -65.8 -45.0 107.0 0.629 0.0 HOH
 7.655
 O
 O
LEU D:44 D:20 89.0 0.524 H -66.1 -45.1 82.0 0.482 0.042 B:Q9GZQ8:0.041
 HOH
 5.421
 O
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 LEU A:27 A:22 85.0 0.5 H -64.8 -39.3 85.0 0.5 0.0 HOH
 4.129
 CD2
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 LEU B:27 B:22 61.0 0.359 H -64.8 -45.8 61.0 0.359 0.0 HOH
 5.249
 CD2
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 LEU B:27 B:22 64.0 0.376 T -143.3 99.7 64.0 0.376 0.0
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 LEU A:35 A:1022 64.0 0.376 H -62.2 -39.4 64.0 0.376 0.0 GOL
HOH
 9.000
3.464
 O
CD1
 O2
O
LEU B:35 B:1022 67.0 0.394 H -62.8 -40.9 67.0 0.394 0.0 SO4
HOH
 9.378
5.877
 O
N
 O1
O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 LEU A:52 A:37 59.0 0.347 H -67.0 -54.3 59.0 0.347 0.0 HOH
 6.727
 O
 O
LEU B:52 B:37 73.0 0.429 H -59.3 -54.9 NA NA NA
LEU C:52 C:37 88.0 0.518 H -61.5 -50.8 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 LEU A:37 A:38 75.0 0.441 H -47.3 -54.5 75.0 0.441 0.0
LEU B:37 B:38 72.0 0.424 H -62.0 -44.1 NA NA NA
LEU C:37 C:38 75.0 0.441 H -75.8 -40.5 NA NA NA
LEU D:37 D:38 72.0 0.424 H -69.3 -63.5 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 LEU A:37 A:49 82.0 0.482 H -61.7 -54.1 82.0 0.482 0.0 HOH
 5.826
 CD1
 O
LEU B:37 B:49 100.0 0.588 H -60.0 -50.3 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 LEU A:26 A:26 58.0 0.341 H -64.2 -47.5 58.0 0.341 0.0 SO4
SO4
HOH
 8.126
9.211
3.947
 CD1
O
CD1
 O2
O1
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 LEU A:26 A:26 96.0 0.565 H -63.5 -46.0 96.0 0.565 0.0 HOH
 6.627
 O
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 LEU A:29 A:22 85.0 0.5 H -63.8 -51.6 85.0 0.5 0.0 SO4
HOH
 9.974
3.598
 O
CB
 O2
O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 LEU A:37 A:38 59.0 0.347 H -49.7 -57.1 59.0 0.347 0.0 HOH
 3.514
 CB
 O
LEU B:37 B:38 63.0 0.371 H -65.6 -38.3 63.0 0.371 0.0 HOH
 5.508
 N
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 LEU A:37 A:37 88.0 0.518 H -67.9 -48.3 88.0 0.518 0.0 HOH
 3.760
 CD2
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 LEU A:40 A:22 78.0 0.459 H -61.4 -41.4 78.0 0.459 0.0 SO4
HOH
 9.107
3.784
 O
CD1
 O1
O
LEU B:40 B:22 69.0 0.406 H -62.9 -40.9 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 LEU A:40 A:22 83.0 0.488 H -62.4 -46.1 83.0 0.488 0.0 HOH
 4.381
 CD2
 O
LEU B:40 B:22 70.0 0.412 H -63.0 -45.7 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 LEU A:22 A:22 68.0 0.4 H -62.8 -41.3 68.0 0.4 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 LEU B:19 C:22 84.0 0.494 H -63.3 -39.3 21.0 0.124 0.37 D:Q0PF16:0.188
A:Q0PF16:0.182
LEU C:19 D:22 75.0 0.441 H -64.2 -40.0 28.0 0.165 0.276 D:Q0PF16:0.141
A:Q0PF16:0.135
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:24 A:22 110.0 0.611 H -60.5 -44.2 110.0 0.611 0.0 HOH
 3.569
 OE1
 O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:24 A:22 100.0 0.556 H -63.2 -39.5 100.0 0.556 0.0 HOH
 3.071
 NE2
 O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:24 A:22 99.0 0.55 H -59.6 -43.0 99.0 0.55 0.0 HOH
 3.097
 OE1
 O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 GLN A:22 A:22 97.0 0.539 H -69.3 -40.4 97.0 0.539 0.0 GOL
HOH
 6.566
3.582
 N
O
 O2
O
GLN B:22 B:22 111.0 0.617 H -69.0 -35.6 NA NA NA
GLN C:22 C:22 116.0 0.644 H -67.6 -42.1 116.0 0.644 0.0 HOH
 2.950
 NE2
 O
GLN D:22 D:22 96.0 0.533 H -65.8 -39.6 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 GLN A:23 A:22 52.0 NA H -57.7 -38.6 52.0 NA NA
GLN B:23 B:22 62.0 NA H -86.2 1.8 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 GLN A:26 A:26 111.0 0.617 H -68.7 -37.9 111.0 0.617 0.0 HOH
 3.724
 N
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 GLN A:37 A:38 87.0 0.483 H -66.0 -42.6 87.0 0.483 0.0 HOH
 2.572
 OE1
 O
GLN B:37 B:38 93.0 0.517 H -64.0 -42.9 93.0 0.517 0.0 HOH
 4.614
 OE1
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 GLN A:37 A:33 133.0 0.739 H -61.9 -44.0 133.0 0.739 0.0
GLN B:37 B:33 125.0 0.694 H -61.7 -44.9 NA NA NA
GLN C:37 C:33 134.0 0.744 H -61.6 -44.8 NA NA NA
GLN D:37 D:33 132.0 0.733 H -60.5 -44.6 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 GLN A:34 A:22 110.0 0.611 H -65.0 -46.4 110.0 0.611 0.0 HOH
 3.144
 OE1
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 GLN A:22 A:26 96.0 0.533 H -58.2 -44.0 96.0 0.533 0.0 NOV
HOH
 3.593
3.363
 NE2
OE1
 N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 LEU A:22 A:22 65.0 0.382 H -62.5 -43.7
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 LEU A:22 A:22 62.0 0.365 H -61.3 -43.4
af-q9h492-f1 1 Q9H492 80.99 5e-71 GLN A:22 A:22 96.0 0.533 H -60.3 -41.8