Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013841 . C A CCDS41841.1:NM_001085481.1:c.94Ccg>Acg_NP_001078950.1:p.32P>T Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 PRO A:32 B:32 3.0 0.021 E -78.4 123.0 0.0 0.0 0.021 B:Q8IVP5:0.021
 HOH
 6.234
 CG
 O
PRO C:32 A:32 2.0 0.014 E -75.5 125.5 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 PRO A:37 A:32 2.0 0.014 E -81.2 120.5 2.0 0.014 0.0 HOH
 3.955
 CD
 O
PRO C:37 C:32 3.0 0.021 E -80.6 116.6 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 PRO A:37 A:32 2.0 0.014 E -84.0 120.9 2.0 0.014 0.0 HOH
 4.266
 CD
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 PRO A:42 A:32 6.0 0.041 E -86.5 108.9 6.0 0.041 0.0 HOH
 3.001
 HD3
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 PRO A:32 A:32 4.0 0.028 E -85.4 125.0 4.0 0.028 0.0 HOH
 7.465
 O
 O
PRO B:32 B:32 2.0 0.014 E -89.6 124.5 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 PRO A:32 A:32 4.0 0.028 E -77.7 109.8 0.0 0.0 0.028 B:O70511:0.028
 HOH
 7.403
 O
 O
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 PRO A:32 A:32 12.0 0.083 E -84.7 120.0 9.0 0.062 0.021 D:Q01484:0.021
 HOH
 4.773
 CD
 O
PRO B:32 B:32 3.0 0.021 E -82.2 128.1 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 PRO A:32 A:32 9.0 0.062 E -79.0 115.6 9.0 0.062 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 PRO B:37 B:32 5.0 0.034 E -80.5 116.8 5.0 0.034 0.0 HOH
 7.734
 O
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 PRO B:37 B:32 4.0 0.028 E -78.7 116.8 4.0 0.028 0.0 HOH
 6.834
 CD
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 PRO A:32 A:32 7.0 0.048 E -83.3 110.4 7.0 0.048 0.0 HOH
 3.405
 CG
 O
PRO B:32 B:32 4.0 0.028 E -82.3 110.3 NA NA NA
PRO C:32 C:32 4.0 0.028 E -81.6 113.6 NA NA NA
PRO D:32 D:32 5.0 0.034 E -81.4 113.5 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 PRO A:31 A:32 6.0 0.041 E -82.7 121.8 6.0 0.041 0.0 HOH
 3.488
 CG
 O
PRO B:31 B:32 5.0 0.034 E -83.5 120.8 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 PRO A:33 A:32 5.0 0.034 E -75.0 138.8 4.0 0.028 0.006 B:O08623:0.007
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 PRO A:42 A:32 2.0 0.014 E -83.6 120.1 0.0 0.0 0.014 B:Q9GZQ8:0.014
 HOH
 4.608
 CD
 O
PRO B:42 B:32 3.0 0.021 E -83.3 118.4 3.0 0.021 0.0 HOH
 4.048
 CD
 O
PRO C:42 C:32 2.0 0.014 E -82.5 117.9 0.0 0.0 0.014 D:Q9GZQ8:0.014
 HOH
 6.443
 CD
 O
PRO D:42 D:32 4.0 0.028 E -82.5 114.8 4.0 0.028 0.0 HOH
 3.432
 CG
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 PRO A:54 A:30 3.0 0.021 E -81.9 124.6 3.0 0.021 0.0 HOH
 7.549
 CD
 O
PRO B:54 B:30 3.0 0.021 E -79.6 123.2 0.0 0.0 0.021 A:Q9GZQ8:0.021
 HOH
 4.023
 CD
 O
PRO C:54 C:30 2.0 0.014 E -81.6 123.1 2.0 0.014 0.0 HOH
 7.101
 CD
 O
PRO D:54 D:30 2.0 0.014 E -81.4 124.0 2.0 0.014 0.0 HOH
 6.589
 CG
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 PRO A:37 A:32 7.0 0.048 E -75.1 109.3 7.0 0.048 0.0 HOH
 3.407
 CD
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 PRO B:37 B:32 3.0 0.021 E -81.1 114.7 3.0 0.021 0.0 HOH
 6.364
 CG
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 PRO B:37 B:32 11.0 0.076 E -80.7 137.2 11.0 0.076 0.0
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 PRO A:45 A:1032 7.0 0.048 E -82.5 120.3 7.0 0.048 0.0 HOH
 4.011
 CD
 O
PRO B:45 B:1032 6.0 0.041 E -82.3 121.3 6.0 0.041 0.0 SO4
HOH
 9.903
6.796
 N
CD
 O4
O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 PRO A:62 A:47 0.0 0.0 E -83.0 129.1 0.0 0.0 0.0 HOH
 4.664
 CD
 O
PRO B:62 B:47 3.0 0.021 E -82.5 128.2 NA NA NA
PRO C:62 C:47 4.0 0.028 E -78.8 129.1 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 PRO A:47 A:48 2.0 0.014 E -80.0 124.3 2.0 0.014 0.0
PRO B:47 B:48 2.0 0.014 E -81.3 125.0 NA NA NA
PRO C:47 C:48 2.0 0.014 E -82.6 118.9 NA NA NA
PRO D:47 D:48 3.0 0.021 E -74.0 115.7 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 PRO A:47 A:59 4.0 0.028 E -82.1 121.3 4.0 0.028 0.0 HOH
 7.880
 O
 O
PRO B:47 B:59 6.0 0.041 E -72.9 116.8 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 PRO A:36 A:36 0.0 0.0 E -86.5 113.7 0.0 0.0 0.0 HOH
 4.253
 CD
 O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 PRO A:36 A:36 0.0 0.0 E -83.5 114.7 0.0 0.0 0.0 8Z6
HOH
 8.016
4.239
 CA
CD
 OAN
O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 PRO A:39 A:32 3.0 0.021 E -74.4 107.4 3.0 0.021 0.0 HOH
 3.987
 CD
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 PRO A:47 A:48 5.0 0.034 E -84.5 114.9 5.0 0.034 0.0 HOH
 5.504
 CD
 O
PRO B:47 B:48 5.0 0.034 E -84.2 120.9 5.0 0.034 0.0 HOH
 7.657
 O
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 PRO A:47 A:47 1.0 0.007 E -87.7 115.4 1.0 0.007 0.0 HOH
 4.274
 CD
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 PRO A:50 A:32 4.0 0.028 E -72.0 126.5 4.0 0.028 0.0 HOH
 3.791
 CD
 O
PRO B:50 B:32 4.0 0.028 E -71.9 126.7 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 PRO A:50 A:32 4.0 0.028 E -73.6 127.3 4.0 0.028 0.0 HOH
 7.677
 CG
 O
PRO B:50 B:32 4.0 0.028 E -75.5 125.5 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 PRO A:32 A:32 4.0 0.028 E -77.3 107.7 0.0 0.0 0.028 B:Q96CV9:0.028
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 PRO B:29 C:32 4.0 0.028 E -86.7 128.7 0.0 0.0 0.028 A:Q0PF16:0.028
PRO C:29 D:32 4.0 0.028 E -85.9 129.0 0.0 0.0 0.028 D:Q0PF16:0.028
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 PRO A:34 A:32 6.0 0.041 E -83.8 121.1 6.0 0.041 0.0 JO4
GOL
HOH
 8.871
8.163
3.421
 C
CA
CG
 C10
O1
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 PRO A:34 A:32 7.0 0.048 E -84.6 121.9 7.0 0.048 0.0 2LZ
HOH
 9.254
3.468
 CA
CG
 C12
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 PRO A:34 A:32 7.0 0.048 E -80.3 121.8 7.0 0.048 0.0 2JI
HOH
 9.332
3.415
 C
CG
 C2
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 PRO A:32 A:32 2.0 0.014 E -80.7 116.8 1.0 0.007 0.007 E:Q9BQS8:0.007
 GOL
HOH
 7.302
6.283
 CG
CD
 O2
O
PRO B:32 B:32 1.0 0.007 E -80.7 113.9 NA NA NA
PRO C:32 C:32 2.0 0.014 E -81.6 113.4 0.0 0.0 0.014 G:Q9BQS8:0.014
 HOH
 7.555
 O
 O
PRO D:32 D:32 1.0 0.007 E -80.2 114.4 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 PRO A:33 A:32 6.0 0.041 E -81.5 110.0 6.0 0.041 0.0
PRO B:33 B:32 4.0 0.028 E -85.4 121.3 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 PRO A:36 A:36 7.0 0.048 E -84.5 113.8 7.0 0.048 0.0 HOH
 3.331
 CG
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 PRO A:47 A:48 10.0 0.069 E -87.2 123.4 10.0 0.069 0.0 HOH
 3.375
 CG
 O
PRO B:47 B:48 9.0 0.062 E -85.4 119.8 9.0 0.062 0.0 HOH
 3.387
 CG
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 PRO A:47 A:43 6.0 0.041 E -83.4 118.0 6.0 0.041 0.0 HOH
 8.149
 O
 O
PRO B:47 B:43 5.0 0.034 E -82.3 117.3 NA NA NA
PRO C:47 C:43 6.0 0.041 E -81.4 118.3 NA NA NA
PRO D:47 D:43 5.0 0.034 E -83.0 117.9 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 PRO A:44 A:32 3.0 0.021 E -83.1 123.0 3.0 0.021 0.0 HOH
 4.213
 CD
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 PRO A:32 A:36 6.0 0.041 E -84.1 129.6 6.0 0.041 0.0 NOV
HOH
 6.850
3.550
 CB
CG
 C26
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 PRO A:32 A:32 1.0 0.007 E -78.3 113.4
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 PRO A:32 A:32 2.0 0.014 E -78.5 113.7
af-q9h492-f1 1 Q9H492 80.99 5e-71 PRO A:32 A:32 0.0 0.0 E -76.8 113.8