Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013859 . T A CCDS41841.1:NM_001085481.1:c.112Tac>Aac_NP_001078950.1:p.38Y>N Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 TYR A:38 B:38 67.0 0.291 -62.9 138.2 67.0 0.291 0.0 HOH
 2.847
 O
 O
TYR C:38 A:38 62.0 0.27 -50.3 143.2 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 TYR A:43 A:38 46.0 0.2 -53.3 139.6 46.0 0.2 0.0 HOH
 2.912
 O
 O
TYR C:43 C:38 34.0 0.148 -52.8 142.0 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 TYR A:43 A:38 74.0 0.322 -55.7 133.1 74.0 0.322 0.0 HOH
 3.049
 O
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 TYR A:48 A:38 45.0 0.196 -54.1 138.8 45.0 0.196 0.0 HOH
 2.748
 HA
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 TYR A:38 A:38 87.0 0.378 -56.4 129.1 87.0 0.378 0.0 HOH
 3.096
 O
 O
TYR B:38 B:38 61.0 0.265 -60.0 132.0 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 TYR A:38 A:38 72.0 0.313 -57.3 135.3 72.0 0.313 0.0 HOH
 7.829
 CD1
 O
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 TYR A:38 A:38 111.0 0.483 -54.8 135.3 111.0 0.483 0.0 HOH
 3.558
 CD1
 O
TYR B:38 B:38 76.0 0.33 -58.5 140.0 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 TYR A:38 A:38 32.0 0.139 -57.0 117.8 32.0 0.139 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 TYR B:43 B:38 107.0 0.465 -54.4 139.1 24.0 0.104 0.361 A:Q9Y4P1:0.361
 HOH
 3.138
 O
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 TYR B:43 B:38 104.0 0.452 -54.1 136.6 19.0 0.083 0.369 A:Q9Y4P1:0.37
 HOH
 3.300
 O
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 TYR A:38 A:38 71.0 0.309 -55.6 136.4 69.0 0.3 0.009 C:Q9GZQ8:0.009
 SO4
HOH
 8.407
3.085
 O
CD1
 O1
O
TYR B:38 B:38 80.0 0.348 -55.1 133.8 NA NA NA
TYR C:38 C:38 37.0 0.161 -51.4 133.8 NA NA NA
TYR D:38 D:38 57.0 0.248 -56.9 135.9 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 TYR A:37 A:38 119.0 0.517 -47.5 142.3 119.0 0.517 0.0 HOH
 4.698
 C
 O
TYR B:37 B:38 80.0 0.348 -51.9 140.3 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 TYR A:39 A:38 71.0 0.309 -58.8 139.1 71.0 0.309 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 TYR A:48 A:38 103.0 0.448 -52.9 134.8 103.0 0.448 0.0 HOH
 2.866
 O
 O
TYR B:48 B:38 87.0 0.378 -54.4 142.8 75.0 0.326 0.052 C:Q9GZQ8:0.052
 HOH
 2.693
 OH
 O
TYR C:48 C:38 108.0 0.47 -55.4 142.0 108.0 0.47 0.0 HOH
 3.622
 CD1
 O
TYR D:48 D:38 77.0 0.335 -48.3 133.6 77.0 0.335 0.0 HOH
 2.941
 O
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 TYR A:60 A:36 51.0 0.222 -51.4 135.5 51.0 0.222 0.0 HOH
 2.927
 O
 O
TYR B:60 B:36 76.0 0.33 -49.5 130.8 76.0 0.33 0.0 HOH
 2.842
 O
 O
TYR C:60 C:36 67.0 0.291 -50.9 135.4 32.0 0.139 0.152 A:Q9GZQ8:0.074
B:Q9GZQ8:0.078
 HOH
 2.561
 O
 O
TYR D:60 D:36 72.0 0.313 -48.0 130.8 72.0 0.313 0.0 HOH
 3.124
 O
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 TYR A:43 A:38 132.0 0.574 -58.4 133.6 132.0 0.574 0.0 HOH
 5.772
 N
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 TYR B:43 B:38 107.0 0.465 -53.6 142.0 24.0 0.104 0.361 A:Q9Y4P1:0.361
 HOH
 2.597
 OH
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 TYR B:43 B:38 78.0 0.339 -53.6 128.8 78.0 0.339 0.0
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 TYR A:51 A:1038 104.0 0.452 -52.4 144.6 104.0 0.452 0.0 HOH
 4.119
 CE1
 O
TYR B:51 B:1038 113.0 0.491 -51.9 142.3 113.0 0.491 0.0 HOH
 3.363
 CD1
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 TYR A:68 A:53 63.0 0.274 -56.9 129.4 63.0 0.274 0.0 HOH
 2.777
 O
 O
TYR B:68 B:53 74.0 0.322 -55.7 123.7 NA NA NA
TYR C:68 C:53 78.0 0.339 -60.5 134.2 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 TYR A:53 A:54 77.0 0.335 -48.7 142.9 77.0 0.335 0.0
TYR B:53 B:54 120.0 0.522 -52.6 140.0 NA NA NA
TYR C:53 C:54 126.0 0.548 -50.3 129.3 NA NA NA
TYR D:53 D:54 123.0 0.535 -60.7 130.6 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 TYR A:53 A:65 67.0 0.291 -55.9 140.3 67.0 0.291 0.0 HOH
 5.885
 N
 O
TYR B:53 B:65 51.0 0.222 -44.5 157.0 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 TYR A:42 A:42 53.0 0.23 -50.9 137.0 53.0 0.23 0.0 HOH
 2.829
 O
 O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 TYR A:42 A:42 57.0 0.248 -50.7 137.9 57.0 0.248 0.0 HOH
 2.792
 O
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 TYR A:45 A:38 55.0 0.239 -52.2 141.0 55.0 0.239 0.0 SO4
HOH
 3.781
2.932
 CA
O
 O3
O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 TYR A:53 A:54 94.0 0.409 -49.8 133.0 94.0 0.409 0.0 HOH
 3.175
 CD1
 O
TYR B:53 B:54 77.0 0.335 -45.0 145.0 77.0 0.335 0.0 HOH
 2.927
 O
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 TYR A:53 A:53 48.0 0.209 -50.6 134.0 48.0 0.209 0.0 HOH
 2.782
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 TYR A:56 A:38 75.0 0.326 -52.8 135.6 75.0 0.326 0.0 HOH
 3.052
 O
 O
TYR B:56 B:38 54.0 0.235 -51.2 137.2 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 TYR A:56 A:38 125.0 0.543 -51.5 133.8 125.0 0.543 0.0 HOH
 3.762
 CE2
 O
TYR B:56 B:38 94.0 0.409 -50.8 136.8 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 TYR A:38 A:38 50.0 0.217 -59.9 144.9 50.0 0.217 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 TYR B:35 C:38 121.0 0.526 -64.0 158.0 121.0 0.526 0.0
TYR C:35 D:38 116.0 0.504 -64.2 159.0 116.0 0.504 0.0
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 TYR A:40 A:38 102.0 0.443 -47.1 138.4 102.0 0.443 0.0 HOH
 4.110
 C
 O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 TYR A:40 A:38 102.0 0.443 -50.1 138.9 102.0 0.443 0.0 HOH
 2.803
 O
 O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 TYR A:40 A:38 120.0 0.522 -53.3 136.8 120.0 0.522 0.0 HOH
 2.967
 O
 O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 TYR A:38 A:38 60.0 0.261 -52.8 150.3 60.0 0.261 0.0 HOH
 3.576
 O
 O
TYR B:38 B:38 69.0 0.3 -54.3 144.6 NA NA NA
TYR C:38 C:38 57.0 0.248 -53.4 143.4 39.0 0.17 0.078 A:Q9H492:0.078
 HOH
 6.115
 N
 O
TYR D:38 D:38 71.0 0.309 -54.9 141.5 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 TYR A:39 A:38 91.0 0.396 -50.3 138.3 91.0 0.396 0.0
TYR B:39 B:38 24.0 NA -64.9 139.7 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 TYR A:42 A:42 94.0 0.409 -49.4 141.7 94.0 0.409 0.0 HOH
 2.622
 O
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 TYR A:53 A:54 74.0 0.322 -49.4 128.9 74.0 0.322 0.0 HOH
 3.642
 CA
 O
TYR B:53 B:54 56.0 0.243 -57.0 138.0 28.0 0.122 0.121 A:O75143+Q9H492:0.122
 HOH
 2.544
 OH
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 TYR A:53 A:49 107.0 0.465 -61.5 146.6 107.0 0.465 0.0 HOH
 6.902
 HA
 O
TYR B:53 B:49 76.0 0.33 -61.2 145.9 NA NA NA
TYR C:53 C:49 86.0 0.374 -61.5 147.8 NA NA NA
TYR D:53 D:49 109.0 0.474 -61.4 146.9 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 TYR A:50 A:38 84.0 0.365 -56.2 141.6 84.0 0.365 0.0 HOH
 2.755
 O
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 TYR A:38 A:42 108.0 0.47 -50.2 138.1 108.0 0.47 0.0 HOH
 2.759
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 TYR A:38 A:38 52.0 0.226 -56.9 145.7
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 TYR A:38 A:38 55.0 0.239 -57.7 143.2
af-q9h492-f1 1 Q9H492 80.99 5e-71 TYR A:38 A:38 72.0 0.313 -56.9 145.7