Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 117013876 | . | G | A | CCDS41841.1:NM_001085481.1:c.129caG>caA_NP_001078950.1:p.43Q>Q | Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5gmv | 1 | Q9GZQ8 | 99.2 | 1e-88 |
X-RAY |
2017-03-08 | GLN | A:43 | B:43 | 154.0 | 0.856 | S | -80.4 | -45.5 | 154.0 | 0.856 | 0.0 |
HOH |
3.376 |
N |
O |
||
GLN | C:43 | A:43 | 135.0 | 0.75 | S | -90.1 | -47.2 | NA | NA | NA | |||||||||||||
2zjd | 1 | Q9GZQ8 | 99.2 | 2e-88 |
X-RAY |
2008-06-03 | GLN | A:48 | A:43 | 117.0 | 0.65 | S | -73.5 | -60.9 | 117.0 | 0.65 | 0.0 |
HOH |
2.606 |
OE1 |
O |
||
GLN | C:48 | C:43 | 125.0 | 0.694 | S | -67.1 | -45.6 | NA | NA | NA | |||||||||||||
5d94 | 1 | Q9GZQ8 | 99.2 | 2e-88 |
X-RAY |
2015-10-21 | GLN | A:48 | A:43 | 76.0 | 0.422 | S | -69.5 | -53.9 | 76.0 | 0.422 | 0.0 |
HOH |
2.614 |
O |
O |
||
6lan | 1 | Q8IVM0,Q9GZQ8 | 98.4 | 1e-87 |
X-RAY |
2020-09-30 | GLN | A:53 | A:43 | 152.0 | 0.844 | S | -95.6 | -44.1 | 152.0 | 0.844 | 0.0 |
HOH |
2.458 |
OE1 |
O |
||
5wrd | 1 | Q9CQV6 | 94.4 | 2e-85 |
X-RAY |
2017-03-29 | GLN | A:43 | A:43 | 115.0 | 0.639 | S | -98.7 | -26.4 | 115.0 | 0.639 | 0.0 |
HOH |
3.668 |
CG |
O |
||
GLN | B:43 | B:43 | 119.0 | 0.661 | S | -106.6 | -13.2 | NA | NA | NA | |||||||||||||
5yiq | 1 | Q9CQV6 | 94.4 | 2e-85 |
X-RAY |
2018-05-23 | GLN | A:43 | A:43 | 119.0 | 0.661 | S | -71.7 | -48.5 | 119.0 | 0.661 | 0.0 |
HOH |
2.703 |
O |
O |
||
5yis | 1 | Q9CQV6 | 94.4 | 2e-85 |
X-RAY |
2018-05-23 | GLN | A:43 | A:43 | 154.0 | 0.856 | S | -112.0 | -47.5 | 154.0 | 0.856 | 0.0 | ||||||
GLN | B:43 | B:43 | 176.0 | 0.978 | S | -91.0 | -45.8 | NA | NA | NA | |||||||||||||
2n9x | 1 | Q9GZQ8 | 99.17 | 4e-85 |
NMR |
2016-12-14 | GLN | A:43 | A:43 | 106.0 | 0.589 | -72.8 | -37.7 | 106.0 | 0.589 | 0.0 | |||||||
2z0e | 2 | Q62625 | 95.16 | 8e-85 |
X-RAY |
2007-05-22 | GLN | B:48 | B:43 | 83.0 | NA | S | -82.4 | -38.9 | 83.0 | NA | NA |
HOH |
5.362 |
CB |
O |
||
2zzp | 2 | Q62625 | 95.16 | 8e-85 |
X-RAY |
2009-03-03 | GLN | B:48 | B:43 | 79.0 | NA | S | -90.3 | -42.0 | 79.0 | NA | NA |
HOH |
3.308 |
N |
O |
||
6j04 | 1 | Q9GZQ8 | 98.39 | 8e-85 |
X-RAY |
2019-11-06 | GLN | A:43 | A:43 | 121.0 | 0.672 | S | -61.6 | -55.2 | 121.0 | 0.672 | 0.0 |
SO4 HOH |
5.859 3.273 |
O N |
O2 O |
||
GLN | B:43 | B:43 | 124.0 | 0.689 | S | -114.6 | -7.4 | NA | NA | NA | |||||||||||||
GLN | C:43 | C:43 | 130.0 | 0.722 | S | -115.4 | -12.1 | NA | NA | NA | |||||||||||||
GLN | D:43 | D:43 | 105.0 | 0.583 | S | -99.2 | -20.3 | NA | NA | NA | |||||||||||||
5xad | 1 | Q9GZQ8 | 99.16 | 3e-84 |
X-RAY |
2017-07-12 | GLN | A:42 | A:43 | 135.0 | 0.75 | S | -81.0 | -40.6 | 135.0 | 0.75 | 0.0 |
HOH |
3.112 |
OE1 |
O |
||
GLN | B:42 | B:43 | 102.0 | 0.567 | S | -72.1 | -39.7 | NA | NA | NA | |||||||||||||
2k6q | 1 | Q62625 | 97.5 | 4e-84 |
NMR |
2008-09-02 | GLN | A:44 | A:43 | 72.0 | 0.4 | S | -74.1 | -86.9 | 72.0 | 0.4 | 0.0 | ||||||
5xac | 1 | Q9GZQ8 | 99.16 | 5e-84 |
X-RAY |
2017-07-12 | GLN | A:53 | A:43 | 126.0 | 0.7 | S | -122.3 | -45.9 | 126.0 | 0.7 | 0.0 |
HOH |
2.734 |
OE1 |
O |
||
GLN | B:53 | B:43 | 166.0 | 0.922 | S | -73.5 | -46.2 | 127.0 | 0.706 | 0.216 |
C:Q9GZQ8:0.217 |
HOH |
3.505 |
N |
O |
||||||||
GLN | C:53 | C:43 | 154.0 | 0.856 | S | -77.1 | -52.3 | 154.0 | 0.856 | 0.0 |
HOH |
6.692 |
CG |
O |
|||||||||
GLN | D:53 | D:43 | 111.0 | 0.617 | S | -112.2 | 0.3 | 80.0 | 0.444 | 0.173 |
B:Q9GZQ8:0.172 |
HOH |
2.081 |
NE2 |
O |
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5xae | 1 | Q9GZQ8 | 99.16 | 6e-84 |
X-RAY |
2017-07-12 | GLN | A:65 | A:41 | 156.0 | 0.867 | S | -121.9 | -38.3 | 84.0 | 0.467 | 0.4 |
C:Q9GZQ8:0.161 B:Q9GZQ8:0.239 |
HOH |
2.248 |
OE1 |
O |
|
GLN | B:65 | B:41 | 136.0 | 0.756 | S | -115.1 | -47.2 | 136.0 | 0.756 | 0.0 |
HOH |
3.080 |
NE2 |
O |
|||||||||
GLN | C:65 | C:41 | 144.0 | 0.8 | S | -116.2 | -49.3 | 144.0 | 0.8 | 0.0 |
HOH |
2.116 |
NE2 |
O |
|||||||||
GLN | D:65 | D:41 | 144.0 | 0.8 | S | -118.9 | -48.2 | 144.0 | 0.8 | 0.0 |
HOH |
3.821 |
N |
O |
|||||||||
1ugm | 1 | Q62625 | 97.5 | 7e-84 |
X-RAY |
2004-07-06 | GLN | A:48 | A:43 | 124.0 | 0.689 | S | -72.1 | -58.6 | 124.0 | 0.689 | 0.0 |
HOH |
6.481 |
O |
O |
||
2z0d | 2 | Q62625 | 97.5 | 7e-84 |
X-RAY |
2007-05-22 | GLN | B:48 | B:43 | 134.0 | 0.744 | S | -74.2 | -49.9 | 96.0 | 0.533 | 0.211 |
A:Q9Y4P1:0.211 |
HOH |
3.206 |
OE1 |
O |
|
5ms2 | 2 | Q9GZQ8 | 99.16 | 2e-83 |
X-RAY |
2017-04-19 | GLN | B:48 | B:43 | 151.0 | 0.839 | S | -98.5 | -3.6 | 151.0 | 0.839 | 0.0 | ||||||
5v4k | 1 | Q9GZQ8 | 99.15 | 3e-83 |
X-RAY |
2017-05-17 | GLN | A:56 | A:1043 | 130.0 | 0.722 | S | -73.3 | -24.6 | 130.0 | 0.722 | 0.0 |
HOH |
2.968 |
O |
O |
||
GLN | B:56 | B:1043 | 131.0 | 0.728 | S | -84.1 | -25.3 | 131.0 | 0.728 | 0.0 |
HOH |
4.075 |
OE1 |
O |
|||||||||
3vtw | 1 | Q96CV9,Q9GZQ8 | 99.15 | 4e-83 |
X-RAY |
2013-06-26 | GLN | A:73 | A:58 | 128.0 | 0.711 | S | -107.5 | -43.7 | 128.0 | 0.711 | 0.0 |
HOH |
2.863 |
OE1 |
O |
||
GLN | B:73 | B:58 | 145.0 | 0.806 | S | -103.0 | -40.7 | NA | NA | NA | |||||||||||||
GLN | C:73 | C:58 | 156.0 | 0.867 | S | -103.2 | -63.5 | NA | NA | NA | |||||||||||||
3wao | 1 | O75143,Q9GZQ8 | 99.15 | 5e-83 |
X-RAY |
2013-12-25 | GLN | A:58 | A:59 | 136.0 | 0.756 | S | -110.9 | -46.8 | 136.0 | 0.756 | 0.0 | ||||||
GLN | B:58 | B:59 | 104.0 | 0.578 | S | -114.1 | -35.2 | NA | NA | NA | |||||||||||||
GLN | C:58 | C:59 | 114.0 | 0.633 | S | -105.4 | -35.7 | NA | NA | NA | |||||||||||||
GLN | D:58 | D:59 | 117.0 | 0.65 | S | -95.7 | -52.1 | NA | NA | NA | |||||||||||||
3x0w | 1 | Q9GZQ8 | 99.15 | 6e-83 |
X-RAY |
2015-01-14 | GLN | A:58 | A:70 | 138.0 | 0.767 | S | -38.1 | -63.5 | 138.0 | 0.767 | 0.0 |
HOH |
5.885 |
O |
O |
||
GLN | B:58 | B:70 | 133.0 | 0.739 | S | -47.2 | -63.8 | NA | NA | NA | |||||||||||||
3vtu | 1 | Q9GZQ8 | 98.32 | 7e-83 |
X-RAY |
2013-06-26 | GLN | A:47 | A:47 | 140.0 | 0.778 | S | -107.2 | -36.9 | 140.0 | 0.778 | 0.0 |
SO4 HOH |
9.317 3.429 |
O OE1 |
O4 O |
||
7elg | 1 | Q9GZQ8 | 98.32 | 7e-83 |
X-RAY |
2021-10-13 | GLN | A:47 | A:47 | 136.0 | 0.756 | S | -111.8 | -16.5 | 136.0 | 0.756 | 0.0 |
HOH |
2.983 |
O |
O |
||
5dcn | 1 | Q9GZQ8 | 99.15 | 8e-83 |
X-RAY |
2016-03-09 | GLN | A:50 | A:43 | 129.0 | 0.717 | S | -120.1 | -30.1 | 129.0 | 0.717 | 0.0 |
HOH |
4.396 |
N |
O |
||
4waa | 1 | Q9GZQ8 | 99.15 | 8e-83 |
X-RAY |
2015-09-09 | GLN | A:58 | A:59 | 126.0 | 0.7 | S | -62.2 | -44.3 | 126.0 | 0.7 | 0.0 |
HOH |
2.820 |
CG |
O |
||
GLN | B:58 | B:59 | 138.0 | 0.767 | S | -87.6 | -26.5 | 138.0 | 0.767 | 0.0 |
HOH |
2.992 |
O |
O |
|||||||||
3vtv | 1 | Q96CV9,Q9GZQ8 | 99.15 | 9e-83 |
X-RAY |
2013-06-26 | GLN | A:58 | A:58 | 143.0 | 0.794 | S | -110.7 | -35.0 | 143.0 | 0.794 | 0.0 |
HOH |
2.138 |
CG |
O |
||
5ms5 | 1 | Q5ZUV9,Q9GZQ8 | 99.15 | 1e-82 |
X-RAY |
2017-04-19 | GLN | A:61 | A:43 | 109.0 | 0.606 | S | -84.9 | -43.7 | 109.0 | 0.606 | 0.0 |
HOH |
2.626 |
OE1 |
O |
||
GLN | B:61 | B:43 | 119.0 | 0.661 | S | -82.8 | -42.9 | NA | NA | NA | |||||||||||||
5ms6 | 1 | Q9GZQ8 | 99.15 | 1e-82 |
X-RAY |
2017-04-19 | GLN | A:61 | A:43 | 127.0 | 0.706 | S | -84.4 | -43.7 | 127.0 | 0.706 | 0.0 |
HOH |
3.534 |
NE2 |
O |
||
GLN | B:61 | B:43 | 125.0 | 0.694 | S | -89.3 | -45.1 | NA | NA | NA | |||||||||||||
2lue | 1 | Q9GZQ8 | 99.13 | 9e-81 |
NMR |
2013-07-17 | GLN | A:43 | A:43 | 104.0 | 0.578 | S | -74.1 | -55.1 | 104.0 | 0.578 | 0.0 | ||||||
5w9a | 2 | Q9GZQ8 | 99.12 | 9e-80 |
X-RAY |
2018-10-10 | GLN | B:40 | C:43 | 114.0 | 0.633 | S | -67.0 | -22.4 | 114.0 | 0.633 | 0.0 | ||||||
GLN | C:40 | D:43 | 73.0 | NA | S | -69.2 | -22.8 | 73.0 | NA | NA | |||||||||||||
7r9w | 1 | Q9H492 | 81.67 | 1e-70 |
X-RAY |
2022-01-12 | GLN | A:45 | A:43 | 132.0 | 0.733 | S | -84.1 | -49.7 | 132.0 | 0.733 | 0.0 |
HOH |
3.889 |
OE1 |
O |
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7r9z | 1 | Q9H492 | 81.67 | 1e-70 |
X-RAY |
2022-01-12 | GLN | A:45 | A:43 | 122.0 | 0.678 | S | -94.1 | -35.8 | 122.0 | 0.678 | 0.0 |
HOH |
3.614 |
NE2 |
O |
||
7ra0 | 1 | Q9H492 | 81.67 | 1e-70 |
X-RAY |
2022-01-12 | GLN | A:45 | A:43 | 114.0 | 0.633 | S | -93.5 | -42.1 | 114.0 | 0.633 | 0.0 |
HOH |
3.719 |
OE1 |
O |
||
5cx3 | 1 | Q9H492 | 80.99 | 1e-70 |
X-RAY |
2016-08-03 | GLN | A:43 | A:43 | 147.0 | 0.817 | S | -75.6 | -39.3 | 147.0 | 0.817 | 0.0 |
HOH |
2.417 |
NE2 |
O |
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GLN | B:43 | B:43 | 161.0 | 0.894 | S | -79.7 | -35.0 | NA | NA | NA | |||||||||||||
GLN | C:43 | C:43 | 122.0 | 0.678 | S | -76.4 | -42.2 | 122.0 | 0.678 | 0.0 |
HOH |
9.218 |
OE1 |
O |
|||||||||
GLN | D:43 | D:43 | 108.0 | 0.6 | S | -78.8 | -38.7 | NA | NA | NA | |||||||||||||
3eci | 1 | Q9H492 | 80.99 | 1e-70 |
X-RAY |
2008-10-14 | GLN | A:44 | A:43 | 84.0 | NA | S | -68.9 | 2.5 | 84.0 | NA | NA | ||||||
GLN | B:44 | B:43 | 88.0 | NA | S | -76.3 | -8.4 | NA | NA | NA | |||||||||||||
3wal | 1 | Q9H492 | 80.17 | 1e-69 |
X-RAY |
2013-12-25 | GLN | A:47 | A:47 | 103.0 | 0.572 | S | -70.9 | -49.5 | 103.0 | 0.572 | 0.0 |
HOH |
3.416 |
O |
O |
||
3wan | 1 | O75143,Q9H492 | 80.83 | 1e-69 |
X-RAY |
2013-12-25 | GLN | A:58 | A:59 | 150.0 | 0.833 | S | -113.0 | -33.5 | 150.0 | 0.833 | 0.0 |
HOH |
2.822 |
O |
O |
||
GLN | B:58 | B:59 | 131.0 | 0.728 | S | -75.3 | -47.3 | 86.0 | 0.478 | 0.25 |
A:O75143+Q9H492:0.25 |
HOH |
3.189 |
O |
O |
||||||||
5dpr | 1 | Q9Y4G2,Q9H492 | 80.83 | 2e-69 |
X-RAY |
2016-09-28 | GLN | A:58 | A:54 | 74.0 | NA | S | -75.0 | -42.2 | 74.0 | NA | NA |
HOH |
4.877 |
N |
O |
||
GLN | B:58 | B:54 | 158.0 | 0.878 | S | -75.0 | -40.3 | NA | NA | NA | |||||||||||||
GLN | C:58 | C:54 | 85.0 | NA | S | -74.1 | -40.7 | NA | NA | NA | |||||||||||||
GLN | D:58 | D:54 | 156.0 | 0.867 | S | -75.7 | -41.1 | NA | NA | NA | |||||||||||||
4zdv | 1 | Q9H492 | 81.51 | 2e-69 |
X-RAY |
2015-06-03 | GLN | A:55 | A:43 | 160.0 | 0.889 | S | -99.7 | -36.0 | 160.0 | 0.889 | 0.0 |
HOH |
3.198 |
O |
O |
||
6tbe | 1 | Q9H492 | 81.03 | 4e-67 |
X-RAY |
2020-11-18 | GLN | A:43 | A:47 | 125.0 | 0.694 | S | -95.0 | -49.7 | 125.0 | 0.694 | 0.0 |
HOH |
2.816 |
NE2 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-a6nce7-f1 | 1 | A6NCE7 | 100.0 | 1e-90 | GLN | A:43 | A:43 | 108.0 | 0.6 | S | -93.2 | -38.4 | |
af-q9gzq8-f1 | 1 | Q9GZQ8 | 99.2 | 5e-89 | GLN | A:43 | A:43 | 119.0 | 0.661 | S | -90.2 | -40.5 | |
af-q9h492-f1 | 1 | Q9H492 | 80.99 | 5e-71 | GLN | A:43 | A:43 | 89.0 | 0.494 | S | -93.2 | -38.4 |