Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013876 . G A CCDS41841.1:NM_001085481.1:c.129caG>caA_NP_001078950.1:p.43Q>Q Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 GLN A:43 B:43 154.0 0.856 S -80.4 -45.5 154.0 0.856 0.0 HOH
 3.376
 N
 O
GLN C:43 A:43 135.0 0.75 S -90.1 -47.2 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 GLN A:48 A:43 117.0 0.65 S -73.5 -60.9 117.0 0.65 0.0 HOH
 2.606
 OE1
 O
GLN C:48 C:43 125.0 0.694 S -67.1 -45.6 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 GLN A:48 A:43 76.0 0.422 S -69.5 -53.9 76.0 0.422 0.0 HOH
 2.614
 O
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 GLN A:53 A:43 152.0 0.844 S -95.6 -44.1 152.0 0.844 0.0 HOH
 2.458
 OE1
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 GLN A:43 A:43 115.0 0.639 S -98.7 -26.4 115.0 0.639 0.0 HOH
 3.668
 CG
 O
GLN B:43 B:43 119.0 0.661 S -106.6 -13.2 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 GLN A:43 A:43 119.0 0.661 S -71.7 -48.5 119.0 0.661 0.0 HOH
 2.703
 O
 O
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 GLN A:43 A:43 154.0 0.856 S -112.0 -47.5 154.0 0.856 0.0
GLN B:43 B:43 176.0 0.978 S -91.0 -45.8 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 GLN A:43 A:43 106.0 0.589 -72.8 -37.7 106.0 0.589 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 GLN B:48 B:43 83.0 NA S -82.4 -38.9 83.0 NA NA HOH
 5.362
 CB
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 GLN B:48 B:43 79.0 NA S -90.3 -42.0 79.0 NA NA HOH
 3.308
 N
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 GLN A:43 A:43 121.0 0.672 S -61.6 -55.2 121.0 0.672 0.0 SO4
HOH
 5.859
3.273
 O
N
 O2
O
GLN B:43 B:43 124.0 0.689 S -114.6 -7.4 NA NA NA
GLN C:43 C:43 130.0 0.722 S -115.4 -12.1 NA NA NA
GLN D:43 D:43 105.0 0.583 S -99.2 -20.3 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 GLN A:42 A:43 135.0 0.75 S -81.0 -40.6 135.0 0.75 0.0 HOH
 3.112
 OE1
 O
GLN B:42 B:43 102.0 0.567 S -72.1 -39.7 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 GLN A:44 A:43 72.0 0.4 S -74.1 -86.9 72.0 0.4 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 GLN A:53 A:43 126.0 0.7 S -122.3 -45.9 126.0 0.7 0.0 HOH
 2.734
 OE1
 O
GLN B:53 B:43 166.0 0.922 S -73.5 -46.2 127.0 0.706 0.216 C:Q9GZQ8:0.217
 HOH
 3.505
 N
 O
GLN C:53 C:43 154.0 0.856 S -77.1 -52.3 154.0 0.856 0.0 HOH
 6.692
 CG
 O
GLN D:53 D:43 111.0 0.617 S -112.2 0.3 80.0 0.444 0.173 B:Q9GZQ8:0.172
 HOH
 2.081
 NE2
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 GLN A:65 A:41 156.0 0.867 S -121.9 -38.3 84.0 0.467 0.4 C:Q9GZQ8:0.161
B:Q9GZQ8:0.239
 HOH
 2.248
 OE1
 O
GLN B:65 B:41 136.0 0.756 S -115.1 -47.2 136.0 0.756 0.0 HOH
 3.080
 NE2
 O
GLN C:65 C:41 144.0 0.8 S -116.2 -49.3 144.0 0.8 0.0 HOH
 2.116
 NE2
 O
GLN D:65 D:41 144.0 0.8 S -118.9 -48.2 144.0 0.8 0.0 HOH
 3.821
 N
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 GLN A:48 A:43 124.0 0.689 S -72.1 -58.6 124.0 0.689 0.0 HOH
 6.481
 O
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 GLN B:48 B:43 134.0 0.744 S -74.2 -49.9 96.0 0.533 0.211 A:Q9Y4P1:0.211
 HOH
 3.206
 OE1
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 GLN B:48 B:43 151.0 0.839 S -98.5 -3.6 151.0 0.839 0.0
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 GLN A:56 A:1043 130.0 0.722 S -73.3 -24.6 130.0 0.722 0.0 HOH
 2.968
 O
 O
GLN B:56 B:1043 131.0 0.728 S -84.1 -25.3 131.0 0.728 0.0 HOH
 4.075
 OE1
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 GLN A:73 A:58 128.0 0.711 S -107.5 -43.7 128.0 0.711 0.0 HOH
 2.863
 OE1
 O
GLN B:73 B:58 145.0 0.806 S -103.0 -40.7 NA NA NA
GLN C:73 C:58 156.0 0.867 S -103.2 -63.5 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 GLN A:58 A:59 136.0 0.756 S -110.9 -46.8 136.0 0.756 0.0
GLN B:58 B:59 104.0 0.578 S -114.1 -35.2 NA NA NA
GLN C:58 C:59 114.0 0.633 S -105.4 -35.7 NA NA NA
GLN D:58 D:59 117.0 0.65 S -95.7 -52.1 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 GLN A:58 A:70 138.0 0.767 S -38.1 -63.5 138.0 0.767 0.0 HOH
 5.885
 O
 O
GLN B:58 B:70 133.0 0.739 S -47.2 -63.8 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 GLN A:47 A:47 140.0 0.778 S -107.2 -36.9 140.0 0.778 0.0 SO4
HOH
 9.317
3.429
 O
OE1
 O4
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 GLN A:47 A:47 136.0 0.756 S -111.8 -16.5 136.0 0.756 0.0 HOH
 2.983
 O
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 GLN A:50 A:43 129.0 0.717 S -120.1 -30.1 129.0 0.717 0.0 HOH
 4.396
 N
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 GLN A:58 A:59 126.0 0.7 S -62.2 -44.3 126.0 0.7 0.0 HOH
 2.820
 CG
 O
GLN B:58 B:59 138.0 0.767 S -87.6 -26.5 138.0 0.767 0.0 HOH
 2.992
 O
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 GLN A:58 A:58 143.0 0.794 S -110.7 -35.0 143.0 0.794 0.0 HOH
 2.138
 CG
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 GLN A:61 A:43 109.0 0.606 S -84.9 -43.7 109.0 0.606 0.0 HOH
 2.626
 OE1
 O
GLN B:61 B:43 119.0 0.661 S -82.8 -42.9 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 GLN A:61 A:43 127.0 0.706 S -84.4 -43.7 127.0 0.706 0.0 HOH
 3.534
 NE2
 O
GLN B:61 B:43 125.0 0.694 S -89.3 -45.1 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 GLN A:43 A:43 104.0 0.578 S -74.1 -55.1 104.0 0.578 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 GLN B:40 C:43 114.0 0.633 S -67.0 -22.4 114.0 0.633 0.0
GLN C:40 D:43 73.0 NA S -69.2 -22.8 73.0 NA NA
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:45 A:43 132.0 0.733 S -84.1 -49.7 132.0 0.733 0.0 HOH
 3.889
 OE1
 O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:45 A:43 122.0 0.678 S -94.1 -35.8 122.0 0.678 0.0 HOH
 3.614
 NE2
 O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 GLN A:45 A:43 114.0 0.633 S -93.5 -42.1 114.0 0.633 0.0 HOH
 3.719
 OE1
 O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 GLN A:43 A:43 147.0 0.817 S -75.6 -39.3 147.0 0.817 0.0 HOH
 2.417
 NE2
 O
GLN B:43 B:43 161.0 0.894 S -79.7 -35.0 NA NA NA
GLN C:43 C:43 122.0 0.678 S -76.4 -42.2 122.0 0.678 0.0 HOH
 9.218
 OE1
 O
GLN D:43 D:43 108.0 0.6 S -78.8 -38.7 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 GLN A:44 A:43 84.0 NA S -68.9 2.5 84.0 NA NA
GLN B:44 B:43 88.0 NA S -76.3 -8.4 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 GLN A:47 A:47 103.0 0.572 S -70.9 -49.5 103.0 0.572 0.0 HOH
 3.416
 O
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 GLN A:58 A:59 150.0 0.833 S -113.0 -33.5 150.0 0.833 0.0 HOH
 2.822
 O
 O
GLN B:58 B:59 131.0 0.728 S -75.3 -47.3 86.0 0.478 0.25 A:O75143+Q9H492:0.25
 HOH
 3.189
 O
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 GLN A:58 A:54 74.0 NA S -75.0 -42.2 74.0 NA NA HOH
 4.877
 N
 O
GLN B:58 B:54 158.0 0.878 S -75.0 -40.3 NA NA NA
GLN C:58 C:54 85.0 NA S -74.1 -40.7 NA NA NA
GLN D:58 D:54 156.0 0.867 S -75.7 -41.1 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 GLN A:55 A:43 160.0 0.889 S -99.7 -36.0 160.0 0.889 0.0 HOH
 3.198
 O
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 GLN A:43 A:47 125.0 0.694 S -95.0 -49.7 125.0 0.694 0.0 HOH
 2.816
 NE2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 GLN A:43 A:43 108.0 0.6 S -93.2 -38.4
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 GLN A:43 A:43 119.0 0.661 S -90.2 -40.5
af-q9h492-f1 1 Q9H492 80.99 5e-71 GLN A:43 A:43 89.0 0.494 S -93.2 -38.4