Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013925 . A C CCDS41841.1:NM_001085481.1:c.178Atg>Ctg_NP_001078950.1:p.60M>L Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 MET A:60 B:60 6.0 0.032 H -63.6 -37.4 6.0 0.032 0.0 HOH
 4.923
 SD
 O
MET C:60 A:60 5.0 0.027 H -57.4 -34.4 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 MET A:65 A:60 0.0 0.0 H -61.3 -33.3 0.0 0.0 0.0 HOH
 5.294
 O
 O
MET C:65 C:60 4.0 0.022 H -61.3 -37.6 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 MET A:65 A:60 2.0 0.011 H -66.7 -33.6 2.0 0.011 0.0 HOH
 5.204
 O
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 MET A:70 A:60 3.0 0.016 H -63.9 -34.7 3.0 0.016 0.0 HOH
 2.878
 HE3
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 MET A:60 A:60 4.0 0.022 H -57.6 -36.5 4.0 0.022 0.0 GOL
HOH
 4.020
6.199
 CE
N
 C3
O
MET B:60 B:60 3.0 0.016 H -63.2 -41.5 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 MET A:60 A:60 7.0 0.038 H -67.1 -36.6 7.0 0.038 0.0
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 MET A:60 A:60 4.0 0.022 H -58.3 -43.6 4.0 0.022 0.0 GOL
 3.254
 CE
 O3
MET B:60 B:60 4.0 0.022 H -58.4 -39.2 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 MET A:60 A:60 0.0 0.0 H -58.5 -38.1 0.0 0.0 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 MET B:65 B:60 4.0 0.022 H -55.6 -36.9 4.0 0.022 0.0 HOH
 5.011
 O
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 MET B:65 B:60 2.0 0.011 H -63.7 -31.3 2.0 0.011 0.0 HOH
 4.790
 O
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 MET A:60 A:60 2.0 0.011 H -62.4 -29.1 2.0 0.011 0.0 HOH
 5.316
 O
 O
MET B:60 B:60 3.0 0.016 H -52.0 -31.2 NA NA NA
MET C:60 C:60 3.0 0.016 H -60.5 -37.9 NA NA NA
MET D:60 D:60 2.0 0.011 H -61.8 -35.5 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 MET A:59 A:60 1.0 0.005 H -63.6 -37.9 1.0 0.005 0.0 HOH
 2.757
 N
 O
MET B:59 B:60 14.0 0.076 H -60.7 -36.0 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 MET A:61 A:60 5.0 0.027 H -44.7 -28.1 5.0 0.027 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 MET A:70 A:60 3.0 0.016 H -64.3 -35.2 3.0 0.016 0.0 HOH
 2.882
 N
 O
MET B:70 B:60 5.0 0.027 H -62.1 -36.0 2.0 0.011 0.016 D:Q9GZQ8:0.016
 HOH
 2.838
 N
 O
MET C:70 C:60 2.0 0.011 H -57.1 -34.9 2.0 0.011 0.0 HOH
 4.003
 CE
 O
MET D:70 D:60 2.0 0.011 H -59.9 -35.2 2.0 0.011 0.0 HOH
 3.966
 CE
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 MET A:82 A:58 23.0 0.124 H -58.4 -39.1 23.0 0.124 0.0 HOH
 5.191
 O
 O
MET B:82 B:58 42.0 0.227 H -59.6 -40.0 42.0 0.227 0.0 HOH
 6.649
 O
 O
MET C:82 C:58 0.0 0.0 H -60.2 -36.2 0.0 0.0 0.0 HOH
 3.463
 CG
 O
MET D:82 D:58 0.0 0.0 H -58.9 -40.6 0.0 0.0 0.0 HOH
 5.165
 O
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 MET A:65 A:60 1.0 0.005 H -59.5 -31.2 1.0 0.005 0.0 HOH
 5.271
 O
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 MET B:65 B:60 3.0 0.016 H -55.8 -44.8 3.0 0.016 0.0 HOH
 3.568
 CE
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 MET B:65 B:60 2.0 0.011 H -62.3 -29.2 2.0 0.011 0.0 HOH
 4.685
 CE
 O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 MET A:73 A:1060 2.0 0.011 H -67.8 -37.8 2.0 0.011 0.0 GOL
HOH
 7.660
2.925
 CG
N
 C3
O
MET B:73 B:1060 3.0 0.016 H -65.7 -34.4 3.0 0.016 0.0 GOL
HOH
 7.559
2.857
 CG
N
 O2
O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 MET A:90 A:75 0.0 0.0 H -52.1 -41.6 0.0 0.0 0.0 HOH
 7.361
 O
 O
MET B:90 B:75 1.0 0.005 H -58.6 -45.4 NA NA NA
MET C:90 C:75 0.0 0.0 H -50.5 -50.2 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 MET A:75 A:76 1.0 0.005 H -59.2 -43.5 1.0 0.005 0.0
MET B:75 B:76 12.0 0.065 H -51.3 -45.4 NA NA NA
MET C:75 C:76 6.0 0.032 H -42.8 -50.0 NA NA NA
MET D:75 D:76 7.0 0.038 H -67.4 -31.3 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 MET A:75 A:87 1.0 0.005 H -57.9 -39.2 1.0 0.005 0.0 HOH
 6.762
 SD
 O
MET B:75 B:87 1.0 0.005 H -59.2 -38.5 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 MET A:64 A:64 0.0 0.0 H -72.3 -28.6 0.0 0.0 0.0 HOH
 4.241
 CB
 O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 MET A:64 A:64 0.0 0.0 H -65.9 -36.8 0.0 0.0 0.0 HOH
 3.578
 C
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 MET A:67 A:60 0.0 0.0 H -64.1 -39.5 0.0 0.0 0.0 HOH
 5.577
 O
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 MET A:75 A:76 3.0 0.016 H -60.6 -31.4 3.0 0.016 0.0 HOH
 2.869
 N
 O
MET B:75 B:76 2.0 0.011 H -69.0 -29.2 2.0 0.011 0.0 HOH
 2.968
 N
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 MET A:75 A:75 0.0 0.0 H -63.1 -36.6 0.0 0.0 0.0 HOH
 2.841
 N
 O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 MET A:78 A:60 3.0 0.016 H -67.3 -35.0 3.0 0.016 0.0 HOH
 2.990
 N
 O
MET B:78 B:60 4.0 0.022 H -65.3 -34.7 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 MET A:78 A:60 2.0 0.011 H -67.5 -34.2 2.0 0.011 0.0 HOH
 3.249
 N
 O
MET B:78 B:60 2.0 0.011 H -65.7 -34.5 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 MET A:60 A:60 10.0 0.054 H -63.1 -32.2 10.0 0.054 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 MET B:57 C:60 5.0 0.027 H -65.9 -23.6 5.0 0.027 0.0
MET C:57 D:60 5.0 0.027 H -66.4 -23.3 5.0 0.027 0.0
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 MET A:62 A:60 0.0 0.0 H -60.0 -32.6 0.0 0.0 0.0 JO4
HOH
 9.309
5.336
 O
O
 C06
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 MET A:62 A:60 0.0 0.0 H -58.6 -37.4 0.0 0.0 0.0 2LZ
HOH
 8.738
5.523
 O
O
 N10
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 MET A:62 A:60 1.0 0.005 H -57.9 -38.6 1.0 0.005 0.0 2JI
2JI
HOH
 9.135
6.432
5.481
 O
CG
O
 C4
C5
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 MET A:60 A:60 3.0 0.016 H -53.0 -38.1 3.0 0.016 0.0 HOH
 4.080
 CG
 O
MET B:60 B:60 4.0 0.022 H -53.4 -40.4 NA NA NA
MET C:60 C:60 1.0 0.005 H -58.5 -38.2 1.0 0.005 0.0 HOH
 5.434
 CG
 O
MET D:60 D:60 2.0 0.011 H -57.6 -38.4 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 MET A:61 A:60 4.0 0.022 H -53.3 -34.1 4.0 0.022 0.0
MET B:61 B:60 8.0 0.043 H -59.1 -24.8 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 MET A:64 A:64 0.0 0.0 H -59.1 -36.0 0.0 0.0 0.0 HOH
 5.458
 O
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 MET A:75 A:76 6.0 0.032 H -66.2 -33.8 1.0 0.005 0.027 B:O75143+Q9H492:0.027
 HOH
 2.836
 N
 O
MET B:75 B:76 7.0 0.038 H -56.5 -40.5 7.0 0.038 0.0 HOH
 2.789
 N
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 MET A:75 A:71 1.0 0.005 H -66.2 -30.1 1.0 0.005 0.0 HOH
 6.170
 HG3
 O
MET B:75 B:71 0.0 0.0 H -64.6 -30.9 NA NA NA
MET C:75 C:71 14.0 0.076 H -63.7 -32.7 NA NA NA
MET D:75 D:71 4.0 0.022 H -64.5 -31.4 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 MET A:72 A:60 1.0 0.005 H -63.0 -41.0 1.0 0.005 0.0 HOH
 5.376
 O
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 MET A:60 A:64 0.0 0.0 H -55.1 -42.2 0.0 0.0 0.0 NOV
HOH
 8.955
5.404
 CE
O
 C25
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 MET A:60 A:60 3.0 0.016 H -59.6 -33.6
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 MET A:60 A:60 4.0 0.022 H -58.2 -33.9
af-q9h492-f1 1 Q9H492 80.99 5e-71 MET A:60 A:60 7.0 0.038 H -58.5 -36.0