Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013950 . G A CCDS41841.1:NM_001085481.1:c.203aGa>aAa_NP_001078950.1:p.68R>K Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 ARG A:68 B:68 36.0 0.16 H -46.6 -55.1 36.0 0.16 0.0 HOH
 8.991
 NH2
 O
ARG C:68 A:68 68.0 0.302 H -50.0 -48.6 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 ARG A:73 A:68 59.0 0.262 H -53.6 -44.6 59.0 0.262 0.0 HOH
 3.064
 CD
 O
ARG C:73 C:68 57.0 0.253 H -53.2 -43.9 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 ARG A:73 A:68 60.0 0.267 H -59.6 -40.9 60.0 0.267 0.0 HOH
 2.951
 NH2
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 ARG A:78 A:68 74.0 0.329 H -57.8 -38.5 74.0 0.329 0.0 HOH
 2.395
 HH21
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 ARG A:68 A:68 44.0 0.196 H -56.7 -32.8 44.0 0.196 0.0 GOL
HOH
 9.019
3.070
 CD
NH1
 O1
O
ARG B:68 B:68 44.0 0.196 H -53.1 -40.9 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:68 A:68 53.0 0.236 H -57.1 -48.6 53.0 0.236 0.0 HOH
 9.650
 O
 O
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:68 A:68 51.0 0.227 H -60.1 -41.6 51.0 0.227 0.0 GOL
HOH
 9.264
6.176
 NH1
N
 O1
O
ARG B:68 B:68 54.0 0.24 H -58.4 -43.3 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 ARG A:68 A:68 82.0 0.364 H -57.9 -44.4 82.0 0.364 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 ARG B:73 B:68 49.0 0.218 H -62.1 -42.1 16.0 0.071 0.147 A:Q9Y4P1:0.147
 HOH
 3.073
 NH2
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 ARG B:73 B:68 50.0 0.222 H -60.1 -41.3 14.0 0.062 0.16 A:Q9Y4P1:0.16
 HOH
 3.157
 NH1
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 ARG A:68 A:68 68.0 0.302 H -53.9 -45.4 60.0 0.267 0.035 C:Q9GZQ8:0.036
 HOH
 5.956
 CD
 O
ARG B:68 B:68 58.0 0.258 H -54.2 -41.6 NA NA NA
ARG C:68 C:68 24.0 0.107 H -52.0 -45.3 NA NA NA
ARG D:68 D:68 55.0 0.244 H -58.4 -40.1 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 ARG A:67 A:68 47.0 0.209 H -55.6 -42.7 47.0 0.209 0.0 HOH
 2.917
 NH2
 O
ARG B:67 B:68 57.0 0.253 H -55.7 -42.1 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 ARG A:69 A:68 77.0 0.342 H -40.6 -49.5 77.0 0.342 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 ARG A:78 A:68 55.0 0.244 H -59.6 -36.9 55.0 0.244 0.0 HOH
 2.761
 NH1
 O
ARG B:78 B:68 49.0 0.218 H -58.0 -40.1 45.0 0.2 0.018 D:Q9GZQ8:0.018
 HOH
 2.930
 NH2
 O
ARG C:78 C:68 132.0 0.587 H -59.4 -47.2 132.0 0.587 0.0 HOH
 3.811
 NH1
 O
ARG D:78 D:68 55.0 0.244 H -57.8 -38.5 55.0 0.244 0.0 HOH
 2.933
 NH1
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 ARG A:90 A:66 58.0 0.258 H -54.2 -39.9 12.0 0.053 0.205 C:Q9GZQ8:0.204
 HOH
 2.711
 NH1
 O
ARG B:90 B:66 58.0 0.258 H -56.9 -41.4 58.0 0.258 0.0 HOH
 2.817
 NH2
 O
ARG C:90 C:66 54.0 0.24 H -54.6 -39.2 54.0 0.24 0.0 HOH
 5.788
 C
 O
ARG D:90 D:66 55.0 0.244 H -56.5 -47.4 55.0 0.244 0.0 HOH
 2.716
 NH1
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 ARG A:73 A:68 60.0 0.267 H -58.1 -38.4 60.0 0.267 0.0 HOH
 2.965
 NH1
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 ARG B:73 B:68 54.0 0.24 H -59.4 -42.0 17.0 0.076 0.164 A:Q9Y4P1:0.164
 HOH
 2.983
 NH2
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 ARG B:73 B:68 49.0 0.218 H -75.7 -16.6 49.0 0.218 0.0 HOH
 2.949
 NH1
 O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 ARG A:81 A:1068 52.0 0.231 H -58.4 -43.8 52.0 0.231 0.0 SO4
HOH
 9.126
2.781
 N
NH2
 O1
O
ARG B:81 B:1068 52.0 0.231 H -61.1 -38.7 52.0 0.231 0.0 HOH
 3.029
 NH2
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 ARG A:98 A:83 46.0 0.204 H -61.8 -37.4 46.0 0.204 0.0 HOH
 2.651
 NH1
 O
ARG B:98 B:83 62.0 0.276 H -60.5 -41.7 NA NA NA
ARG C:98 C:83 57.0 0.253 H -46.1 -54.5 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 ARG A:83 A:84 50.0 0.222 H -55.0 -38.6 50.0 0.222 0.0
ARG B:83 B:84 59.0 0.262 H -42.8 -29.2 NA NA NA
ARG C:83 C:84 66.0 0.293 H -60.7 -42.8 NA NA NA
ARG D:83 D:84 46.0 0.204 H -54.4 -47.5 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 ARG A:83 A:95 59.0 0.262 H -51.0 -49.4 59.0 0.262 0.0 HOH
 2.926
 NH1
 O
ARG B:83 B:95 59.0 0.262 H -49.8 -51.3 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 ARG A:72 A:72 60.0 0.267 H -62.5 -35.4 60.0 0.267 0.0 SO4
HOH
 7.232
2.901
 O
NH2
 O1
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 ARG A:72 A:72 61.0 0.271 H -55.3 -39.0 61.0 0.271 0.0 HOH
 2.877
 NH2
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 ARG A:75 A:68 42.0 0.187 H -63.5 -41.4 42.0 0.187 0.0 HOH
 2.272
 NH1
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 ARG A:83 A:84 55.0 0.244 H -62.0 -24.9 55.0 0.244 0.0 HOH
 3.003
 NH2
 O
ARG B:83 B:84 58.0 0.258 H -51.7 -40.1 58.0 0.258 0.0 HOH
 3.063
 NE
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 ARG A:83 A:83 62.0 0.276 H -63.4 -38.5 62.0 0.276 0.0 SO4
HOH
 7.124
2.804
 C
NH2
 O2
O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:86 A:68 57.0 0.253 H -60.3 -41.6 57.0 0.253 0.0 HOH
 2.929
 NE
 O
ARG B:86 B:68 58.0 0.258 H -60.5 -43.6 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:86 A:68 57.0 0.253 H -59.4 -39.1 57.0 0.253 0.0 HOH
 3.026
 NE
 O
ARG B:86 B:68 57.0 0.253 H -60.3 -40.9 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 ARG A:68 A:68 96.0 0.427 H -60.5 -40.9 96.0 0.427 0.0
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 ARG B:65 C:68 25.0 NA H -69.3 -32.6 25.0 NA NA
ARG C:65 D:68 30.0 NA H -68.6 -31.3 30.0 NA NA
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:70 A:68 57.0 0.253 H -54.3 -46.4 57.0 0.253 0.0 JO4
HOH
 7.209
3.006
 N
NH1
 C12
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:70 A:68 68.0 0.302 H -58.2 -44.1 68.0 0.302 0.0 2LZ
HOH
 9.410
2.412
 N
NE
 O15
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:70 A:68 70.0 0.311 H -56.8 -44.1 70.0 0.311 0.0 2JI
HOH
 9.135
2.657
 N
O
 C1
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 ARG A:68 A:68 70.0 0.311 H -57.1 -42.5 70.0 0.311 0.0 HOH
 3.183
 O
 O
ARG B:68 B:68 38.0 0.169 H -54.7 -36.6 NA NA NA
ARG C:68 C:68 74.0 0.329 H -57.7 -38.1 74.0 0.329 0.0 HOH
 7.203
 CD
 O
ARG D:68 D:68 70.0 0.311 H -58.7 -38.3 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 ARG A:69 A:68 64.0 0.284 H -44.1 -52.0 64.0 0.284 0.0
ARG B:69 B:68 41.0 NA H -55.5 -55.7 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 ARG A:72 A:72 68.0 0.302 H -57.8 -47.7 68.0 0.302 0.0 HOH
 3.424
 CD
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 ARG A:83 A:84 55.0 0.244 H -56.4 -40.4 21.0 0.093 0.151 B:O75143+Q9H492:0.151
 HOH
 3.011
 NE
 O
ARG B:83 B:84 53.0 0.236 H -56.0 -42.2 53.0 0.236 0.0 HOH
 2.867
 NH1
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 ARG A:83 A:79 58.0 0.258 H -73.5 -43.0 58.0 0.258 0.0 HOH
 3.110
 HE
 O
ARG B:83 B:79 50.0 0.222 H -74.1 -44.1 NA NA NA
ARG C:83 C:79 59.0 0.262 H -71.2 -43.6 NA NA NA
ARG D:83 D:79 57.0 0.253 H -71.8 -46.4 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 ARG A:80 A:68 63.0 0.28 H -57.1 -44.2 63.0 0.28 0.0 HOH
 3.017
 NE
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 ARG A:68 A:72 69.0 0.307 H -59.9 -43.9 69.0 0.307 0.0 NOV
EDO
HOH
 7.070
9.576
2.557
 N
O
O
 C24
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 ARG A:68 A:68 66.0 0.293 H -53.0 -47.7
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 ARG A:68 A:68 70.0 0.311 H -53.2 -48.2
af-q9h492-f1 1 Q9H492 80.99 5e-71 ARG A:68 A:68 61.0 0.271 H -53.8 -47.9