Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013953 . G A CCDS41841.1:NM_001085481.1:c.206aGg>aAg_NP_001078950.1:p.69R>K Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 ARG A:69 B:69 127.0 0.564 H -77.0 -41.3 127.0 0.564 0.0 HOH
 8.020
 CB
 O
ARG C:69 A:69 211.0 0.938 H -66.5 -44.3 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 ARG A:74 A:69 175.0 0.778 H -64.6 -44.3 175.0 0.778 0.0 HOH
 2.771
 NE
 O
ARG C:74 C:69 190.0 0.844 H -66.4 -40.4 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 ARG A:74 A:69 156.0 0.693 H -70.0 -37.7 128.0 0.569 0.124 B:Q9BQS8:0.124
 HOH
 2.983
 CB
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 ARG A:79 A:69 148.0 0.658 H -61.7 -51.6 148.0 0.658 0.0 HOH
 2.883
 HA
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 ARG A:69 A:69 168.0 0.747 H -82.5 -37.0 168.0 0.747 0.0 HOH
 9.026
 N
 O
ARG B:69 B:69 176.0 0.782 H -62.5 -45.4 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:69 A:69 76.0 NA H -63.1 -34.8 69.0 NA NA B:O70511:NA
 ZN
 8.645
 CB
 ZN
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:69 A:69 119.0 NA H -65.1 -39.7 95.0 NA NA D:Q01484:NA
 HOH
 3.572
 CD
 O
ARG B:69 B:69 73.0 NA H -64.6 -40.7 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 ARG A:69 A:69 175.0 0.778 H -65.7 -41.8 175.0 0.778 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 ARG B:74 B:69 59.0 NA H -64.0 -48.0 59.0 NA NA HOH
 3.825
 N
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 ARG B:74 B:69 62.0 NA H -65.8 -43.4 62.0 NA NA HOH
 3.484
 CA
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 ARG A:69 A:69 155.0 0.689 H -74.0 -39.7 155.0 0.689 0.0 HOH
 7.789
 NH2
 O
ARG B:69 B:69 127.0 0.564 H -70.3 -45.9 NA NA NA
ARG C:69 C:69 133.0 0.591 H -63.8 -44.6 NA NA NA
ARG D:69 D:69 145.0 0.644 H -74.0 -36.6 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 ARG A:68 A:69 183.0 0.813 H -68.8 -35.5 183.0 0.813 0.0 HOH
 3.349
 NH1
 O
ARG B:68 B:69 196.0 0.871 H -67.2 -42.2 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 ARG A:70 A:69 145.0 0.644 H -53.5 -43.3 78.0 0.347 0.297 B:O08623:0.298
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 ARG A:79 A:69 171.0 0.76 H -70.3 -43.5 142.0 0.631 0.129 C:Q9GZQ8:0.129
 HOH
 3.060
 NE
 O
ARG B:79 B:69 164.0 0.729 H -67.6 -38.6 164.0 0.729 0.0 HOH
 2.500
 NH1
 O
ARG C:79 C:69 171.0 0.76 H -62.7 -45.0 171.0 0.76 0.0 HOH
 2.505
 NH2
 O
ARG D:79 D:69 169.0 0.751 H -74.0 -37.0 108.0 0.48 0.271 B:Q9GZQ8:0.271
 HOH
 2.620
 NH1
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 ARG A:91 A:67 208.0 0.924 H -78.1 -29.1 95.0 0.422 0.502 C:Q9GZQ8:0.502
 HOH
 2.441
 NH1
 O
ARG B:91 B:67 212.0 0.942 H -77.8 -25.6 212.0 0.942 0.0 HOH
 5.535
 N
 O
ARG C:91 C:67 212.0 0.942 H -78.8 -26.9 212.0 0.942 0.0 HOH
 2.683
 NH1
 O
ARG D:91 D:67 217.0 0.964 H -81.0 -19.9 217.0 0.964 0.0 HOH
 3.322
 CG
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 ARG A:74 A:69 154.0 0.684 H -70.2 -37.8 154.0 0.684 0.0 HOH
 3.047
 NE
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 ARG B:74 B:69 58.0 NA H -64.5 -48.0 58.0 NA NA HOH
 3.562
 N
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 ARG B:74 B:69 169.0 0.751 H -85.5 -43.6 169.0 0.751 0.0 HOH
 5.056
 N
 O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 ARG A:82 A:1069 160.0 0.711 H -65.0 -40.5 160.0 0.711 0.0 SO4
HOH
 2.793
2.638
 NH2
NE
 O1
O
ARG B:82 B:1069 184.0 0.818 H -64.5 -46.9 184.0 0.818 0.0 HOH
 3.345
 CG
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 ARG A:99 A:84 164.0 0.729 H -65.4 -44.1 164.0 0.729 0.0 HOH
 2.755
 NH2
 O
ARG B:99 B:84 189.0 0.84 H -64.0 -44.7 NA NA NA
ARG C:99 C:84 195.0 0.867 H -55.6 -50.6 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 ARG A:84 A:85 171.0 0.76 H -66.6 -47.3 171.0 0.76 0.0
ARG B:84 B:85 185.0 0.822 H -95.6 -14.3 NA NA NA
ARG C:84 C:85 186.0 0.827 H -66.2 -39.7 NA NA NA
ARG D:84 D:85 192.0 0.853 H -64.7 -34.8 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 ARG A:84 A:96 125.0 0.556 H -62.3 -46.6 125.0 0.556 0.0 HOH
 4.370
 O
 O
ARG B:84 B:96 159.0 0.707 H -60.8 -47.9 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 ARG A:73 A:73 147.0 0.653 H -67.5 -44.1 147.0 0.653 0.0 SO4
HOH
 6.563
2.805
 O
O
 O1
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 ARG A:73 A:73 146.0 0.649 H -68.2 -44.1 146.0 0.649 0.0 HOH
 2.783
 O
 O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 ARG A:76 A:69 179.0 0.796 H -67.7 -37.0 179.0 0.796 0.0 HOH
 4.995
 NH1
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 ARG A:84 A:85 141.0 0.627 H -83.5 -44.9 141.0 0.627 0.0 HOH
 3.591
 NE
 O
ARG B:84 B:85 158.0 0.702 H -75.1 -43.5 158.0 0.702 0.0 HOH
 3.475
 NH2
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 ARG A:84 A:84 151.0 0.671 H -64.9 -43.4 151.0 0.671 0.0 SO4
HOH
 2.899
2.828
 NE
O
 O2
O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:87 A:69 153.0 0.68 H -63.7 -44.4 153.0 0.68 0.0 HOH
 3.563
 N
 O
ARG B:87 B:69 131.0 0.582 H -64.9 -43.5 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:87 A:69 137.0 0.609 H -63.8 -49.1 137.0 0.609 0.0 HOH
 4.156
 CA
 O
ARG B:87 B:69 126.0 0.56 H -65.1 -47.9 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 ARG A:69 A:69 184.0 0.818 H -59.5 -59.6 158.0 0.702 0.116 B:Q96CV9:0.116
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 ARG B:66 C:69 149.0 0.662 H -76.6 -36.5 97.0 0.431 0.231 D:Q0PF16:0.004
A:Q0PF16:0.231
ARG C:66 D:69 134.0 0.596 H -76.1 -38.1 75.0 0.333 0.263 D:Q0PF16:0.258
A:Q0PF16:0.004
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:71 A:69 150.0 0.667 H -64.3 -38.3 150.0 0.667 0.0 JO4
HOH
 7.604
2.860
 NH2
O
 O03
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:71 A:69 156.0 0.693 H -63.6 -37.4 156.0 0.693 0.0 2LZ
HOH
 8.151
2.697
 NH2
O
 N10
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:71 A:69 157.0 0.698 H -63.5 -38.6 157.0 0.698 0.0 2JI
HOH
 7.922
2.822
 NH2
O
 C5
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 ARG A:69 A:69 180.0 0.8 H -73.6 -40.2 115.0 0.511 0.289 E:Q9BQS8:0.289
 HOH
 3.552
 CA
 O
ARG B:69 B:69 182.0 0.809 H -72.8 -42.4 NA NA NA
ARG C:69 C:69 202.0 0.898 H -73.5 -42.4 105.0 0.467 0.431 G:Q9BQS8:0.431
 HOH
 6.632
 NH1
 O
ARG D:69 D:69 171.0 0.76 H -73.5 -41.8 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 ARG A:70 A:69 71.0 NA H -61.8 -46.5 71.0 NA NA
ARG B:70 B:69 78.0 NA H -59.8 -56.5 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 ARG A:73 A:73 155.0 0.689 H -58.4 -40.7 155.0 0.689 0.0 HOH
 2.893
 NH1
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 ARG A:84 A:85 164.0 0.729 H -65.7 -45.6 164.0 0.729 0.0 HOH
 2.751
 O
 O
ARG B:84 B:85 146.0 0.649 H -69.7 -42.4 146.0 0.649 0.0 HOH
 2.241
 NH1
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 ARG A:84 A:80 166.0 0.738 H -65.0 -32.0 166.0 0.738 0.0 HOH
 5.608
 HA
 O
ARG B:84 B:80 173.0 0.769 H -63.8 -31.3 NA NA NA
ARG C:84 C:80 159.0 0.707 H -62.6 -35.0 NA NA NA
ARG D:84 D:80 175.0 0.778 H -63.2 -31.7 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 ARG A:81 A:69 152.0 0.676 H -67.0 -36.6 152.0 0.676 0.0 HOH
 2.709
 NH2
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 ARG A:69 A:73 161.0 0.716 H -59.6 -41.6 161.0 0.716 0.0 NOV
EDO
HOH
 7.518
6.683
2.774
 NH2
O
O
 O3
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 ARG A:69 A:69 210.0 0.933 H -64.2 -41.3
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 ARG A:69 A:69 195.0 0.867 H -64.6 -41.2
af-q9h492-f1 1 Q9H492 80.99 5e-71 ARG A:69 A:69 207.0 0.92 H -64.0 -41.6