Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117013955 . C A CCDS41841.1:NM_001085481.1:c.208Cgc>Agc_NP_001078950.1:p.70R>S Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
 2017-03-08 ARG A:70 B:70 100.0 0.444 H -53.7 -32.1 64.0 0.284 0.16 B:Q8IVP5:0.16
 HOH
 5.728
 CD
 O
ARG C:70 A:70 96.0 0.427 H -63.3 -37.6 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
 2008-06-03 ARG A:75 A:70 126.0 0.56 H -68.1 -33.4 126.0 0.56 0.0 HOH
 2.667
 O
 O
ARG C:75 C:70 121.0 0.538 H -67.4 -29.2 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
 2015-10-21 ARG A:75 A:70 138.0 0.613 H -58.4 -37.2 55.0 0.244 0.369 B:Q9BQS8:0.369
 HOH
 2.711
 O
 O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
 2020-09-30 ARG A:80 A:70 116.0 0.516 H -57.8 -35.9 116.0 0.516 0.0 HOH
 2.826
 O
 O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
 2017-03-29 ARG A:70 A:70 161.0 0.716 H -58.6 -34.0 161.0 0.716 0.0
ARG B:70 B:70 138.0 0.613 H -63.6 -35.8 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:70 A:70 132.0 0.587 H -65.7 -44.5 74.0 0.329 0.258 B:O70511:0.258
 ZN
 9.547
 CD
 ZN
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
 2018-05-23 ARG A:70 A:70 156.0 0.693 H -64.5 -35.2 97.0 0.431 0.262 D:Q01484:0.262
 HOH
 4.207
 CG
 O
ARG B:70 B:70 149.0 0.662 H -72.8 -25.3 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
 2016-12-14 ARG A:70 A:70 163.0 0.724 H -67.9 -28.9 84.0 0.373 0.351 B:Q8IVP5:0.351
2z0e 2 Q62625 95.16 8e-85 X-RAY
 2007-05-22 ARG B:75 B:70 147.0 0.653 H -56.4 -38.9 147.0 0.653 0.0 HOH
 6.377
 N
 O
2zzp 2 Q62625 95.16 8e-85 X-RAY
 2009-03-03 ARG B:75 B:70 149.0 0.662 H -58.4 -35.3 149.0 0.662 0.0 HOH
 3.063
 NH1
 O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
 2019-11-06 ARG A:70 A:70 67.0 0.298 H -68.1 -32.3 67.0 0.298 0.0 HOH
 3.066
 NH1
 O
ARG B:70 B:70 121.0 0.538 H -56.7 -38.7 NA NA NA
ARG C:70 C:70 125.0 0.556 H -60.9 -36.2 NA NA NA
ARG D:70 D:70 97.0 0.431 H -59.1 -43.5 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
 2017-07-12 ARG A:69 A:70 104.0 0.462 H -64.9 -38.0 104.0 0.462 0.0 HOH
 2.963
 O
 O
ARG B:69 B:70 123.0 0.547 H -65.8 -36.2 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
 2008-09-02 ARG A:71 A:70 93.0 0.413 H -64.2 -53.4 46.0 0.204 0.209 B:O08623:0.209
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
 2017-07-12 ARG A:80 A:70 107.0 0.476 H -59.2 -36.3 35.0 0.156 0.32 C:Q9GZQ8:0.28
B:Q9GZQ8:0.124
 HOH
 2.712
 NH2
 O
ARG B:80 B:70 123.0 0.547 H -63.4 -32.2 120.0 0.533 0.014 A:Q9GZQ8:0.013
 HOH
 2.706
 O
 O
ARG C:80 C:70 128.0 0.569 H -62.5 -32.8 106.0 0.471 0.098 D:Q9GZQ8:0.098
 HOH
 3.187
 NH1
 O
ARG D:80 D:70 120.0 0.533 H -59.5 -36.7 64.0 0.284 0.249 B:Q9GZQ8:0.249
 HOH
 2.706
 NE
 O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
 2017-07-12 ARG A:92 A:68 114.0 0.507 H -67.4 -37.2 114.0 0.507 0.0 HOH
 3.053
 NH2
 O
ARG B:92 B:68 117.0 0.52 H -65.5 -38.4 68.0 0.302 0.218 A:Q9GZQ8:0.218
 HOH
 7.884
 N
 O
ARG C:92 C:68 144.0 0.64 H -64.7 -34.0 144.0 0.64 0.0 HOH
 3.443
 CG
 O
ARG D:92 D:68 139.0 0.618 H -62.6 -37.1 139.0 0.618 0.0 HOH
 3.125
 N
 O
1ugm 1 Q62625 97.5 7e-84 X-RAY
 2004-07-06 ARG A:75 A:70 97.0 0.431 H -68.1 -30.6 97.0 0.431 0.0 HOH
 2.971
 NH1
 O
2z0d 2 Q62625 97.5 7e-84 X-RAY
 2007-05-22 ARG B:75 B:70 148.0 0.658 H -55.6 -42.7 148.0 0.658 0.0 HOH
 3.496
 O
 O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
 2017-04-19 ARG B:75 B:70 121.0 0.538 H -72.2 -38.2 121.0 0.538 0.0 HOH
 7.689
 N
 O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
 2017-05-17 ARG A:83 A:1070 140.0 0.622 H -69.3 -34.1 140.0 0.622 0.0 SO4
HOH
 3.427
3.747
 NH2
CG
 O4
O
ARG B:83 B:1070 146.0 0.649 H -64.5 -31.0 146.0 0.649 0.0 HOH
 2.533
 NE
 O
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
 2013-06-26 ARG A:100 A:85 132.0 0.587 H -65.6 -22.3 132.0 0.587 0.0 HOH
 9.065
 NH2
 O
ARG B:100 B:85 109.0 0.484 H -65.3 -41.6 NA NA NA
ARG C:100 C:85 104.0 0.462 H -59.1 -36.6 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
 2013-12-25 ARG A:85 A:86 112.0 0.498 H -59.6 -42.7 112.0 0.498 0.0
ARG B:85 B:86 111.0 0.493 H -79.3 -32.0 NA NA NA
ARG C:85 C:86 105.0 0.467 H -64.5 -37.3 NA NA NA
ARG D:85 D:86 118.0 0.524 H -67.6 -42.3 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
 2015-01-14 ARG A:85 A:97 88.0 0.391 H -59.8 -37.0 88.0 0.391 0.0 HOH
 3.822
 O
 O
ARG B:85 B:97 94.0 0.418 H -55.5 -39.9 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
 2013-06-26 ARG A:74 A:74 93.0 0.413 H -60.8 -37.4 93.0 0.413 0.0 SO4
SO4
HOH
 7.862
3.498
2.812
 NH2
O
NH2
 O2
O1
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
 2021-10-13 ARG A:74 A:74 104.0 0.462 H -60.4 -35.7 104.0 0.462 0.0 8Z6
HOH
 3.230
2.797
 NH1
O
 OAD
O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
 2016-03-09 ARG A:77 A:70 164.0 0.729 H -73.2 -24.5 164.0 0.729 0.0 HOH
 2.385
 NE
 O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
 2015-09-09 ARG A:85 A:86 139.0 0.618 H -60.1 -38.4 139.0 0.618 0.0 HOH
 3.185
 NH1
 O
ARG B:85 B:86 109.0 0.484 H -53.2 -41.3 109.0 0.484 0.0 HOH
 3.362
 CG
 O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
 2013-06-26 ARG A:85 A:85 115.0 0.511 H -61.2 -36.8 115.0 0.511 0.0 SO4
HOH
 7.374
2.741
 N
O
 O4
O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:88 A:70 99.0 0.44 H -70.3 -29.3 99.0 0.44 0.0 GOL
HOH
 7.916
6.103
 NH2
N
 O3
O
ARG B:88 B:70 160.0 0.711 H -72.3 -26.8 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
 2017-04-19 ARG A:88 A:70 115.0 0.511 H -67.4 -27.1 115.0 0.511 0.0 HOH
 2.539
 NH2
 O
ARG B:88 B:70 151.0 0.671 H -71.1 -24.4 NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
 2013-07-17 ARG A:70 A:70 125.0 0.556 H -70.2 -34.5 90.0 0.4 0.156 B:Q96CV9:0.156
5w9a 2 Q9GZQ8 99.12 9e-80 X-RAY
 2018-10-10 ARG B:67 C:70 108.0 0.48 H -66.3 -38.0 41.0 0.182 0.298 A:Q0PF16:0.298
ARG C:67 D:70 102.0 0.453 H -68.4 -38.5 36.0 0.16 0.293 D:Q0PF16:0.293
7r9w 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:72 A:70 119.0 0.529 H -68.6 -28.1 119.0 0.529 0.0 JO4
GOL
HOH
 3.897
3.220
2.738
 CD
NH1
NH1
 C13
O3
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:72 A:70 99.0 0.44 H -65.2 -30.6 99.0 0.44 0.0 2LZ
HOH
 4.337
2.783
 NH1
NH1
 O15
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
 2022-01-12 ARG A:72 A:70 100.0 0.444 H -65.6 -28.7 100.0 0.444 0.0 2JI
HOH
 6.180
3.442
 NH1
N
 C1
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
 2016-08-03 ARG A:70 A:70 131.0 0.582 H -55.7 -41.7 56.0 0.249 0.333 E:Q9BQS8:0.333
 HOH
 4.031
 CB
 O
ARG B:70 B:70 120.0 0.533 H -57.4 -41.4 NA NA NA
ARG C:70 C:70 149.0 0.662 H -57.9 -44.6 71.0 0.316 0.346 G:Q9BQS8:0.347
 HOH
 8.901
 CB
 O
ARG D:70 D:70 129.0 0.573 H -57.5 -43.5 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
 2008-10-14 ARG A:71 A:70 123.0 0.547 H -70.3 -37.2 123.0 0.547 0.0
ARG B:71 B:70 127.0 0.564 T -77.9 18.6 NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
 2013-12-25 ARG A:74 A:74 99.0 0.44 H -62.4 -32.0 99.0 0.44 0.0 HOH
 2.998
 NH1
 O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
 2013-12-25 ARG A:85 A:86 125.0 0.556 H -63.9 -34.7 125.0 0.556 0.0 HOH
 2.752
 O
 O
ARG B:85 B:86 120.0 0.533 H -59.3 -40.0 120.0 0.533 0.0 HOH
 2.688
 O
 O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
 2016-09-28 ARG A:85 A:81 108.0 0.48 H -69.6 -31.0 108.0 0.48 0.0 HOH
 8.454
 N
 O
ARG B:85 B:81 101.0 0.449 H -71.7 -31.2 NA NA NA
ARG C:85 C:81 105.0 0.467 H -72.8 -32.2 NA NA NA
ARG D:85 D:81 107.0 0.476 H -71.4 -31.6 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
 2015-06-03 ARG A:82 A:70 111.0 0.493 H -63.1 -33.6 111.0 0.493 0.0 HOH
 4.718
 O
 O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
 2020-11-18 ARG A:70 A:74 118.0 0.524 H -63.8 -30.4 118.0 0.524 0.0 NOV
EDO
HOH
 3.734
7.680
3.482
 CD
O
N
 C24
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 ARG A:70 A:70 101.0 0.449 H -68.5 -36.1
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 ARG A:70 A:70 114.0 0.507 H -69.3 -35.1
af-q9h492-f1 1 Q9H492 80.99 5e-71 ARG A:70 A:70 110.0 0.489 H -68.7 -35.6