Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 117014099 . A C CCDS41841.1:NM_001085481.1:c.352Acg>Ccg_NP_001078950.1:p.118T>P Homo sapiens microtubule associated protein 1 light chain 3 beta 2 (MAP1LC3B2), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 99.2 1e-88 X-RAY
2017-03-08 THR A:118 B:118 11.0 0.079 H -67.2 -42.6 11.0 0.079 0.0 HOH
2.743
OG1
O
THR C:118 A:118 12.0 0.086 H -55.5 -56.3 NA NA NA
2zjd 1 Q9GZQ8 99.2 2e-88 X-RAY
2008-06-03 THR A:123 A:118 8.0 0.057 H -54.1 -44.8 8.0 0.057 0.0 HOH
3.273
OG1
O
THR C:123 C:118 16.0 0.114 T -57.4 -46.7 NA NA NA
5d94 1 Q9GZQ8 99.2 2e-88 X-RAY
2015-10-21 THR A:123 A:118 30.0 0.214 H -73.4 -40.1 30.0 0.214 0.0 HOH
3.118
OG1
O
6lan 1 Q8IVM0,Q9GZQ8 98.4 1e-87 X-RAY
2020-09-30 THR A:128 A:118 13.0 0.093 H -59.0 -49.7 13.0 0.093 0.0 HOH
3.189
HG1
O
5wrd 1 Q9CQV6 94.4 2e-85 X-RAY
2017-03-29 THR A:118 A:118 106.0 0.757 -140.5 129.9 106.0 0.757 0.0 HOH
6.705
CA
O
THR B:118 B:118 44.0 0.314 T -78.2 -32.4 NA NA NA
5yiq 1 Q9CQV6 94.4 2e-85 X-RAY
2018-05-23 THR A:118 A:118 115.0 0.821 -81.2 156.4 115.0 0.821 0.0
5yis 1 Q9CQV6 94.4 2e-85 X-RAY
2018-05-23 THR A:118 NA:NA DO NA DO DO DO NA NA NA
THR B:118 B:118 29.0 0.207 H -71.9 -49.1 NA NA NA
2n9x 1 Q9GZQ8 99.17 4e-85 NMR
2016-12-14 THR A:118 A:118 112.0 0.8 -141.8 151.0 112.0 0.8 0.0
2z0e 2 Q62625 95.16 8e-85 X-RAY
2007-05-22 THR B:123 B:118 127.0 0.907 -108.9 161.3 53.0 0.379 0.528 A:Q9Y4P1:0.529
HOH
2.800
O
O
2zzp 2 Q62625 95.16 8e-85 X-RAY
2009-03-03 THR B:123 B:118 125.0 0.893 -108.9 157.2 52.0 0.371 0.522 A:Q9Y4P1:0.521
HOH
4.777
O
O
6j04 1 Q9GZQ8 98.39 8e-85 X-RAY
2019-11-06 THR A:118 A:118 23.0 0.164 H -63.3 -41.5 23.0 0.164 0.0 HOH
2.576
OG1
O
THR B:118 B:118 48.0 0.343 H -53.6 -33.5 NA NA NA
THR C:118 C:118 11.0 0.079 H -61.7 -49.6 NA NA NA
THR D:118 D:118 6.0 0.043 H -55.9 -48.6 NA NA NA
5xad 1 Q9GZQ8 99.16 3e-84 X-RAY
2017-07-12 THR A:117 A:118 175.0 1.0 -132.5 360.0 175.0 1.0 0.0 HOH
4.191
CG2
O
THR B:117 B:118 50.0 0.357 G -59.9 -25.8 NA NA NA
2k6q 1 Q62625 97.5 4e-84 NMR
2008-09-02 THR A:119 A:118 124.0 0.886 S -132.5 52.8 124.0 0.886 0.0
5xac 1 Q9GZQ8 99.16 5e-84 X-RAY
2017-07-12 THR A:128 A:118 173.0 1.0 -97.8 360.0 173.0 1.0 0.0 HOH
2.302
O
O
THR B:128 B:118 121.0 0.864 53.5 360.0 91.0 0.65 0.214 D:Q9GZQ8:0.214
HOH
2.743
OG1
O
THR C:128 NA:NA DO NA DO DO DO NA NA NA
THR D:128 D:118 43.0 0.307 T -61.3 -24.3 43.0 0.307 0.0 HOH
2.695
OG1
O
5xae 1 Q9GZQ8 99.16 6e-84 X-RAY
2017-07-12 THR A:140 A:116 105.0 0.75 -126.6 163.4 105.0 0.75 0.0 HOH
4.894
N
O
THR B:140 B:116 88.0 0.629 -123.4 172.8 88.0 0.629 0.0 HOH
5.581
OG1
O
THR C:140 C:116 110.0 0.786 -127.2 161.1 110.0 0.786 0.0 HOH
3.291
C
O
THR D:140 D:116 111.0 0.793 -130.2 163.1 111.0 0.793 0.0 HOH
6.137
N
O
1ugm 1 Q62625 97.5 7e-84 X-RAY
2004-07-06 THR A:123 NA:NA DO NA DO DO DO NA NA NA
2z0d 2 Q62625 97.5 7e-84 X-RAY
2007-05-22 THR B:123 B:118 123.0 0.879 -109.4 159.7 55.0 0.393 0.486 A:Q9Y4P1:0.486
HOH
2.779
O
O
5ms2 2 Q9GZQ8 99.16 2e-83 X-RAY
2017-04-19 THR B:123 B:118 65.0 0.464 -48.7 145.2 65.0 0.464 0.0 HOH
9.428
N
O
5v4k 1 Q9GZQ8 99.15 3e-83 X-RAY
2017-05-17 THR A:131 A:1118 127.0 0.907 60.9 360.0 127.0 0.907 0.0 HOH
5.087
N
O
THR B:131 NA:NA DO NA DO DO DO NA NA NA
3vtw 1 Q96CV9,Q9GZQ8 99.15 4e-83 X-RAY
2013-06-26 THR A:148 A:133 110.0 0.786 -125.6 173.5 110.0 0.786 0.0 HOH
3.720
N
O
THR B:148 B:133 107.0 0.764 -111.8 124.7 NA NA NA
THR C:148 C:133 123.0 0.879 -136.1 162.7 NA NA NA
3wao 1 O75143,Q9GZQ8 99.15 5e-83 X-RAY
2013-12-25 THR A:133 A:134 108.0 0.771 -137.0 153.4 108.0 0.771 0.0
THR B:133 NA:NA DO NA DO DO DO NA NA NA
THR C:133 NA:NA DO NA DO DO DO NA NA NA
THR D:133 D:134 166.0 1.0 -158.6 360.0 NA NA NA
3x0w 1 Q9GZQ8 99.15 6e-83 X-RAY
2015-01-14 THR A:133 A:145 124.0 0.886 -150.6 360.0 124.0 0.886 0.0 HOH
9.542
N
O
THR B:133 B:145 119.0 0.85 -126.9 360.0 NA NA NA
3vtu 1 Q9GZQ8 98.32 7e-83 X-RAY
2013-06-26 THR A:122 A:122 118.0 0.843 -123.7 147.2 118.0 0.843 0.0 HOH
3.157
OG1
O
7elg 1 Q9GZQ8 98.32 7e-83 X-RAY
2021-10-13 THR A:122 A:122 122.0 0.871 -131.0 147.6 122.0 0.871 0.0 HOH
4.729
N
O
5dcn 1 Q9GZQ8 99.15 8e-83 X-RAY
2016-03-09 THR A:125 A:118 100.0 0.714 -78.0 -58.0 100.0 0.714 0.0 SO4
HOH
9.963
4.772
O
CG2
O3
O
4waa 1 Q9GZQ8 99.15 8e-83 X-RAY
2015-09-09 THR A:133 A:134 104.0 0.743 58.2 360.0 104.0 0.743 0.0 HOH
8.502
OG1
O
THR B:133 B:134 139.0 0.993 56.5 360.0 139.0 0.993 0.0 HOH
8.890
CB
O
3vtv 1 Q96CV9,Q9GZQ8 99.15 9e-83 X-RAY
2013-06-26 THR A:133 A:133 117.0 0.836 -132.9 144.9 117.0 0.836 0.0 HOH
2.801
N
O
5ms5 1 Q5ZUV9,Q9GZQ8 99.15 1e-82 X-RAY
2017-04-19 THR A:136 NA:NA DO NA DO DO DO NA NA NA
THR B:136 B:118 98.0 0.7 157.8 360.0 NA NA NA
5ms6 1 Q9GZQ8 99.15 1e-82 X-RAY
2017-04-19 THR A:136 NA:NA DO NA DO DO DO NA NA NA
THR B:136 NA:NA DO NA DO DO DO NA NA NA
2lue 1 Q9GZQ8 99.13 9e-81 NMR
2013-07-17 THR A:118 A:118 117.0 0.836 -139.6 133.7 117.0 0.836 0.0
7r9w 1 Q9H492 81.67 1e-70 X-RAY
2022-01-12 THR A:120 A:118 142.0 1.0 31.1 360.0 142.0 1.0 0.0 HOH
5.880
CG2
O
7r9z 1 Q9H492 81.67 1e-70 X-RAY
2022-01-12 THR A:120 A:118 143.0 1.0 34.0 360.0 143.0 1.0 0.0 HOH
6.922
O
O
7ra0 1 Q9H492 81.67 1e-70 X-RAY
2022-01-12 THR A:120 A:118 142.0 1.0 54.0 360.0 142.0 1.0 0.0 HOH
4.341
N
O
5cx3 1 Q9H492 80.99 1e-70 X-RAY
2016-08-03 THR A:118 A:118 56.0 0.4 G -57.7 -32.7 43.0 0.307 0.093 C:Q9H492:0.093
HOH
8.104
O
O
THR B:118 B:118 53.0 0.379 G -57.3 -30.4 NA NA NA
THR C:118 C:118 76.0 0.543 G -55.6 -29.1 34.0 0.243 0.3 A:Q9H492:0.3
HOH
2.837
O
O
THR D:118 D:118 60.0 0.429 G -53.1 -32.8 NA NA NA
3eci 1 Q9H492 80.99 1e-70 X-RAY
2008-10-14 THR A:119 NA:NA DO NA DO DO DO NA NA NA
THR B:119 NA:NA DO NA DO DO DO NA NA NA
3wal 1 Q9H492 80.17 1e-69 X-RAY
2013-12-25 THR A:122 A:122 86.0 0.614 -78.7 -38.8 86.0 0.614 0.0 HOH
5.412
N
O
3wan 1 O75143,Q9H492 80.83 1e-69 X-RAY
2013-12-25 THR A:133 A:134 16.0 0.114 -148.4 105.9 16.0 0.114 0.0 HOH
3.201
O
O
THR B:133 B:134 59.0 0.421 73.7 -53.3 1.0 0.007 0.414 A:O75143+Q9H492:0.414
HOH
2.877
N
O
5dpr 1 Q9Y4G2,Q9H492 80.83 2e-69 X-RAY
2016-09-28 THR A:133 A:129 151.0 1.0 -138.0 360.0 151.0 1.0 0.0
THR B:133 B:129 45.0 0.321 T -76.3 -42.9 NA NA NA
THR C:133 C:129 48.0 0.343 T -76.9 -43.3 NA NA NA
THR D:133 D:129 144.0 1.0 106.3 360.0 NA NA NA
4zdv 1 Q9H492 81.51 2e-69 X-RAY
2015-06-03 THR A:130 A:118 112.0 0.8 -127.5 138.7 112.0 0.8 0.0 HOH
3.394
N
O
6tbe 1 Q9H492 81.03 4e-67 X-RAY
2020-11-18 THR A:118 A:122 174.0 1.0 -126.2 360.0 174.0 1.0 0.0 HOH
3.898
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-a6nce7-f1 1 A6NCE7 100.0 1e-90 THR A:118 A:118 22.0 0.157 H -65.8 -43.3
af-q9gzq8-f1 1 Q9GZQ8 99.2 5e-89 THR A:118 A:118 12.0 0.086 H -64.3 -41.8
af-q9h492-f1 1 Q9H492 80.99 5e-71 THR A:118 A:118 46.0 0.329 H -68.0 -25.2