Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 25034332 . A C CCDS44845.1:NM_005504.6:c.293tTg>tGg_NP_005495.2:p.98L>W Homo sapiens branched chain amino acid transaminase 1 (BCAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2cog 1 P54687 99.74 0.0 X-RAY
 2005-08-30 LEU A:98 A:98 2.0 0.012 E -134.0 173.1 2.0 0.012 0.0 PLP
4MV
HOH
 6.724
7.556
3.819
 N
N
C
 O1P
O
O
LEU B:98 B:98 5.0 0.029 E -149.6 163.0 5.0 0.029 0.0 PLP
4MV
HOH
 6.567
7.428
3.054
 N
N
CD2
 O1P
O
O
2coi 1 P54687 99.74 0.0 X-RAY
 2005-08-30 LEU A:98 A:98 2.0 0.012 E -141.1 168.8 2.0 0.012 0.0 PLP
GBN
HOH
 6.802
7.043
3.240
 N
N
CD1
 O1P
OB
O
LEU B:98 B:98 2.0 0.012 E -153.8 172.1 2.0 0.012 0.0 PLP
GBN
HOH
 6.422
6.783
3.263
 N
N
CD2
 O1P
OB
O
2coj 1 P54687 99.74 0.0 X-RAY
 2005-08-30 LEU A:98 A:98 3.0 0.018 E -137.0 178.9 3.0 0.018 0.0 PLP
GBN
HOH
 6.796
6.792
3.447
 N
N
CD1
 O1P
OB
O
LEU B:98 B:98 7.0 0.041 E -149.6 157.1 7.0 0.041 0.0 PLP
GBN
HOH
 6.638
6.978
3.608
 N
N
CA
 O1P
OB
O
2abj 1 P54687 98.91 0.0 X-RAY
 2006-06-27 LEU A:78 A:96 3.0 0.018 E -151.1 171.8 3.0 0.018 0.0 CBC
PLP
HOH
 7.074
6.645
3.451
 N
N
CB
 O39
O2P
O
LEU B:78 D:96 4.0 0.024 E -151.4 170.0 4.0 0.024 0.0 CBC
PLP
HOH
 7.134
6.670
3.464
 N
N
CA
 O38
O2P
O
LEU C:78 G:96 2.0 0.012 E -146.4 170.8 NA NA NA
LEU D:78 J:96 3.0 0.018 E -146.9 174.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p54687-f1 1 P54687 100.0 0.0 LEU A:98 A:98 3.0 0.018 E -131.0 177.0