Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 25047312 . G A CCDS44845.1:NM_005504.6:c.176aCg>aTg_NP_005495.2:p.59T>M Homo sapiens branched chain amino acid transaminase 1 (BCAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2cog 1 P54687 99.74 0.0 X-RAY
 2005-08-30 THR A:59 A:59 8.0 0.057 E -145.8 137.8 8.0 0.057 0.0 HOH
 3.072
 OG1
 O
THR B:59 B:59 8.0 0.057 E -140.4 135.0 8.0 0.057 0.0 HOH
 2.877
 OG1
 O
2coi 1 P54687 99.74 0.0 X-RAY
 2005-08-30 THR A:59 A:59 5.0 0.036 E -134.3 133.4 5.0 0.036 0.0 HOH
 2.860
 OG1
 O
THR B:59 B:59 5.0 0.036 E -134.6 136.6 5.0 0.036 0.0 HOH
 2.727
 OG1
 O
2coj 1 P54687 99.74 0.0 X-RAY
 2005-08-30 THR A:59 A:59 8.0 0.057 E -139.1 147.2 8.0 0.057 0.0 HOH
 3.519
 OG1
 O
THR B:59 B:59 7.0 0.05 E -144.1 134.0 7.0 0.05 0.0 HOH
 3.769
 CG2
 O
2abj 1 P54687 98.91 0.0 X-RAY
 2006-06-27 THR A:39 A:57 9.0 0.064 E -133.5 140.6 9.0 0.064 0.0 HOH
 2.962
 OG1
 O
THR B:39 D:57 11.0 0.079 E -134.0 136.4 11.0 0.079 0.0 HOH
 3.614
 OG1
 O
THR C:39 G:57 7.0 0.05 E -143.0 132.0 NA NA NA
THR D:39 J:57 9.0 0.064 E -137.2 136.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p54687-f1 1 P54687 100.0 0.0 THR A:59 A:59 4.0 0.029 E -138.6 137.6