Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 49333472 . C A CCDS8774.1:NM_001659.2:c.350cGg>cTg_NP_001650.1:p.117R>L Homo sapiens ADP ribosylation factor 3 (ARF3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 96.13 5e-130 X-RAY
 2004-01-20 ARG A:117 A:117 140.0 0.622 T -53.6 -35.2 140.0 0.622 0.0 HOH
 3.175
 CA
 O
ARG C:117 B:117 134.0 0.596 T -59.5 -35.5 NA NA NA
1rrf 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 ARG A:117 A:117 160.0 0.711 T -78.5 -45.7 160.0 0.711 0.0
1rrg 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 ARG A:117 A:117 114.0 0.507 T -78.4 -32.3 114.0 0.507 0.0 HOH
 2.845
 NH2
 O
ARG B:117 B:117 138.0 0.613 G -47.7 -24.1 138.0 0.613 0.0 HOH
 4.389
 O
 O
1hur 1 P84077 96.11 4e-129 X-RAY
 1995-07-10 ARG A:116 A:117 123.0 0.547 S -62.9 -40.4 123.0 0.547 0.0 HOH
 4.186
 O
 O
ARG B:116 B:117 140.0 0.622 T -53.1 -27.5 140.0 0.622 0.0
3o47 1 Q8N6T3,P84077 96.51 1e-121 X-RAY
 2010-08-11 ARG A:265 A:247 46.0 NA T -39.9 -53.3 46.0 NA NA
ARG B:265 B:247 51.0 NA T -38.7 -45.4 NA NA NA
7dn8 2 P84077 96.43 1e-120 X-RAY
 2021-12-15 ARG B:105 D:117 125.0 0.556 T -65.5 -24.6 125.0 0.556 0.0 HOH
 3.691
 N
 O
ARG D:105 B:117 124.0 0.551 T -65.0 -24.9 NA NA NA
ARG F:105 F:117 130.0 0.578 T -65.5 -24.9 NA NA NA
ARG H:105 H:117 121.0 0.538 T -65.2 -24.6 NA NA NA
6ii6 2 P61204 98.19 2e-120 X-RAY
 2019-08-07 ARG C:105 C:117 131.0 0.582 T -60.5 -27.4 131.0 0.582 0.0 HOH
 3.155
 N
 O
ARG D:105 D:117 159.0 0.707 T -42.7 -44.4 NA NA NA
7mge 4 P84077 98.17 3e-120 EM
 2021-06-23 ARG D:103 E:117 149.0 0.662 S -62.6 -37.4 149.0 0.662 0.0
1r8s 1 P84080 98.17 4e-120 X-RAY
 2004-01-20 ARG A:100 A:117 169.0 0.751 T -59.7 -32.8 169.0 0.751 0.0 FMT
HOH
 6.339
3.471
 O
N
 C
O
1re0 1 P32889 98.17 4e-120 X-RAY
 2003-12-16 ARG A:100 A:117 169.0 0.751 T -53.9 -32.4 169.0 0.751 0.0 CIT
HOH
 6.011
2.666
 O
O
 O3
O
1s9d 1 P84080 98.17 4e-120 X-RAY
 2004-02-10 ARG A:100 A:117 175.0 0.778 T -53.0 -40.1 175.0 0.778 0.0 HOH
 2.702
 O
 O
1u81 1 P84077 98.17 4e-120 NMR
 2004-10-05 ARG A:100 A:117 120.0 0.533 S -75.0 -74.6 120.0 0.533 0.0
4c0a 2 P84080 98.17 4e-120 X-RAY
 2013-09-25 ARG C:100 C:117 159.0 0.707 T -50.5 -32.1 NA NA NA
ARG D:100 D:117 155.0 0.689 T -50.5 -30.2 NA NA NA
ARG G:100 G:117 136.0 0.604 T -51.4 -30.9 136.0 0.604 0.0
ARG H:100 H:117 190.0 0.844 T -62.6 -16.6 NA NA NA
6fae 2 P84077 96.99 1e-119 X-RAY
 2018-01-17 ARG B:149 B:117 38.0 NA T -64.7 -34.2 38.0 NA NA HOH
 3.352
 CB
 O
4hmy 5 P84077 97.58 1e-119 X-RAY
 2013-03-06 ARG E:108 C:117 177.0 0.787 S -62.4 -14.2 177.0 0.787 0.0
6cri 3 P84077 97.58 2e-119 EM
 2018-08-01 ARG C:101 C:117 198.0 0.88 -120.7 -31.8 198.0 0.88 0.0
ARG E:101 H:117 142.0 0.631 -115.1 -22.6 109.0 0.484 0.147 F:P35585:0.147
ARG K:101 K:117 193.0 0.858 -124.4 -34.1 193.0 0.858 0.0
ARG M:101 U:117 136.0 0.604 -118.3 -22.9 102.0 0.453 0.151 N:P35585:0.151
ARG S:101 L:117 193.0 0.858 -120.1 -30.5 193.0 0.858 0.0
ARG U:101 V:117 136.0 0.604 -115.9 -21.8 103.0 0.458 0.146 V:P35585:0.147
7dn9 2 P84077 97.58 2e-119 X-RAY
 2021-12-15 ARG B:101 B:117 135.0 0.6 T -72.0 -23.5 135.0 0.6 0.0
ARG D:101 D:117 134.0 0.596 T -72.8 -24.3 NA NA NA
ARG F:101 F:117 135.0 0.6 T -72.4 -23.2 NA NA NA
ARG H:101 H:117 135.0 0.6 T -71.9 -23.1 NA NA NA
6cm9 3 P84077 96.99 2e-119 EM
 2018-08-08 ARG D:129 C:117 188.0 0.836 -127.0 -32.3 188.0 0.836 0.0
ARG F:129 H:117 141.0 0.627 -113.7 -25.7 107.0 0.476 0.151 G:P35585:0.151
6d83 3 P84077 96.99 2e-119 EM
 2018-08-08 ARG D:129 C:117 179.0 0.796 S -133.6 -23.7 179.0 0.796 0.0
ARG F:129 H:117 135.0 0.6 -118.3 -12.2 103.0 0.458 0.142 G:P35585:0.142
6d84 3 P84077 96.99 2e-119 EM
 2018-08-08 ARG D:129 C:117 176.0 0.782 S -133.8 -22.4 176.0 0.782 0.0
ARG F:129 H:117 135.0 0.6 -120.1 -21.1 104.0 0.462 0.138 G:P35585:0.138
ARG L:129 I:117 173.0 0.769 S -133.3 -24.1 173.0 0.769 0.0
ARG N:129 N:117 138.0 0.613 -119.4 -19.8 105.0 0.467 0.146 O:P35585:0.147
6dff 3 P84077 96.99 2e-119 EM
 2018-08-08 ARG D:129 C:117 178.0 0.791 -129.8 -17.3 178.0 0.791 0.0
ARG F:129 H:117 150.0 0.667 -111.6 -20.6 115.0 0.511 0.156 G:P35585:0.156
1j2j 1 Q8BSL7 97.56 9e-119 X-RAY
 2003-05-06 ARG A:102 A:117 157.0 0.698 T -57.2 -35.5 157.0 0.698 0.0 HOH
 2.702
 O
 O
1o3y 1 P84078 97.56 9e-119 X-RAY
 2003-05-20 ARG A:102 A:117 154.0 0.684 T -59.7 -24.0 154.0 0.684 0.0 HOH
 2.920
 NH1
 O
ARG B:102 B:117 171.0 0.76 T -49.8 -42.6 NA NA NA
2j59 1 P84078 97.56 9e-119 X-RAY
 2007-02-20 ARG A:102 A:117 143.0 0.636 T -57.1 -37.0 143.0 0.636 0.0 HOH
 2.930
 O
 O
ARG B:102 B:117 154.0 0.684 T -51.9 -42.3 NA NA NA
ARG C:102 C:117 138.0 0.613 T -53.4 -35.1 NA NA NA
ARG D:102 D:117 183.0 0.813 T -53.1 -42.9 NA NA NA
ARG E:102 E:117 136.0 0.604 T -46.3 -43.7 NA NA NA
ARG F:102 F:117 155.0 0.689 T -49.3 -39.3 NA NA NA
3aq4 1 P36397 87.78 3e-116 X-RAY
 2011-01-26 ARG A:120 A:117 166.0 0.738 T -51.9 -37.6 166.0 0.738 0.0 HOH
 2.728
 O
 O
ARG B:120 B:117 155.0 0.689 T -43.3 -47.0 NA NA NA
5uf8 1 Q5AND9 83.98 9e-113 X-RAY
 2017-01-25 ARG A:117 A:117 130.0 0.578 T -68.6 -26.2 130.0 0.578 0.0 HOH
 3.248
 N
 O
ARG B:117 B:117 52.0 0.231 T -65.6 -28.3 NA NA NA
ARG C:117 C:117 139.0 0.618 T -65.7 -22.7 NA NA NA
ARG D:117 D:117 84.0 0.373 T -68.2 -30.7 NA NA NA
6pta 1 P22274 83.62 2e-111 X-RAY
 2019-07-24 LYS A:117 A:117 77.0 0.385 T -66.8 -22.0 77.0 0.385 0.0 HOH
 8.189
 NZ
 O
LYS B:117 B:117 79.0 0.395 T -69.4 -18.1 NA NA NA
LYS C:117 C:117 59.0 0.295 T -60.5 -30.5 59.0 0.295 0.0 HOH
 3.415
 N
 O
LYS D:117 D:117 78.0 0.39 T -60.5 -22.5 NA NA NA
2b6h 1 P84085 80.57 5e-106 X-RAY
 2005-10-11 ARG A:129 A:117 52.0 NA T -42.5 -42.1 52.0 NA NA HOH
 3.302
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61204-f1 1 P61204 100.0 2e-134 ARG A:117 A:117 155.0 0.689 T -50.5 -41.2
af-p84077-f1 1 P84077 96.13 2e-130 ARG A:117 A:117 151.0 0.671 T -50.4 -44.4