Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 49333545 . C A CCDS8774.1:NM_001659.2:c.277Gac>Tac_NP_001650.1:p.93D>Y Homo sapiens ADP ribosylation factor 3 (ARF3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 96.13 5e-130 X-RAY
 2004-01-20 ASP A:93 A:93 21.0 0.14 E -78.5 101.8 21.0 0.14 0.0 G3D
HOH
 6.135
2.647
 OD2
OD2
 O4'
O
ASP C:93 B:93 22.0 0.147 E -75.2 102.4 NA NA NA
1rrf 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 ASP A:93 A:93 18.0 0.12 -71.5 90.8 18.0 0.12 0.0 GDP
 6.729
 OD2
 O4'
1rrg 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 ASP A:93 A:93 29.0 0.193 E -88.3 94.2 29.0 0.193 0.0 GDP
HOH
 6.224
2.581
 OD2
OD2
 O4'
O
ASP B:93 B:93 26.0 0.173 E -89.0 100.7 26.0 0.173 0.0 GDP
HOH
 5.986
2.715
 OD2
OD2
 O4'
O
1hur 1 P84077 96.11 4e-129 X-RAY
 1995-07-10 ASP A:92 A:93 28.0 0.187 E -82.8 106.7 28.0 0.187 0.0 GDP
HOH
 5.945
2.953
 OD2
O
 O4'
O
ASP B:92 B:93 27.0 0.18 E -77.6 103.9 27.0 0.18 0.0 GDP
HOH
 6.014
2.845
 OD2
OD2
 O4'
O
3o47 1 Q8N6T3,P84077 96.51 1e-121 X-RAY
 2010-08-11 ASP A:241 A:223 24.0 0.16 E -79.4 103.8 24.0 0.16 0.0 GDP
 6.223
 OD2
 O4'
ASP B:241 B:223 22.0 0.147 E -80.2 103.3 NA NA NA
7dn8 2 P84077 96.43 1e-120 X-RAY
 2021-12-15 ASP B:81 D:93 20.0 0.133 E -80.7 103.0 20.0 0.133 0.0 GDP
HOH
 6.151
2.533
 OD2
OD2
 O4'
O
ASP D:81 B:93 22.0 0.147 E -80.7 102.8 NA NA NA
ASP F:81 F:93 22.0 0.147 E -80.8 102.6 NA NA NA
ASP H:81 H:93 23.0 0.153 E -80.8 102.7 NA NA NA
6ii6 2 P61204 98.19 2e-120 X-RAY
 2019-08-07 ASP C:81 C:93 19.0 0.127 E -77.0 103.3 19.0 0.127 0.0 GTP
HOH
 6.478
2.604
 OD1
OD1
 O4'
O
ASP D:81 D:93 19.0 0.127 E -76.4 114.5 NA NA NA
7mge 4 P84077 98.17 3e-120 EM
 2021-06-23 ASP D:79 E:93 18.0 0.12 -70.0 155.9 18.0 0.12 0.0 GDP
 7.068
 OD2
 C8
1r8s 1 P84080 98.17 4e-120 X-RAY
 2004-01-20 ASP A:76 A:93 23.0 0.153 E -79.0 107.0 23.0 0.153 0.0 GDP
HOH
 6.151
2.734
 OD2
OD2
 O4'
O
1re0 1 P32889 98.17 4e-120 X-RAY
 2003-12-16 ASP A:76 A:93 23.0 0.153 E -75.8 107.4 23.0 0.153 0.0 GDP
HOH
 6.089
2.663
 OD1
OD1
 O4'
O
1s9d 1 P84080 98.17 4e-120 X-RAY
 2004-02-10 ASP A:76 A:93 25.0 0.167 E -74.6 104.1 25.0 0.167 0.0 GDP
HOH
 6.216
2.675
 OD2
OD2
 O4'
O
1u81 1 P84077 98.17 4e-120 NMR
 2004-10-05 ASP A:76 A:93 16.0 0.107 -50.4 85.1 16.0 0.107 0.0 GDP
 6.758
 OD2
 C5'
4c0a 2 P84080 98.17 4e-120 X-RAY
 2013-09-25 ASP C:76 C:93 25.0 0.167 E -80.5 103.9 NA NA NA
ASP D:76 D:93 25.0 0.167 E -80.5 104.1 NA NA NA
ASP G:76 G:93 25.0 0.167 E -79.9 103.5 25.0 0.167 0.0 G3D
 6.138
 OD2
 O4'
ASP H:76 H:93 23.0 0.153 E -80.2 103.7 NA NA NA
6fae 2 P84077 96.99 1e-119 X-RAY
 2018-01-17 ASP B:125 B:93 24.0 0.16 E -83.6 103.1 24.0 0.16 0.0 HOH
 2.885
 OD2
 O
4hmy 5 P84077 97.58 1e-119 X-RAY
 2013-03-06 ASP E:84 C:93 18.0 0.12 E -86.7 96.2 18.0 0.12 0.0 GTP
 6.513
 OD2
 O4'
6cri 3 P84077 97.58 2e-119 EM
 2018-08-01 ASP C:77 C:93 4.0 0.027 -128.9 84.6 4.0 0.027 0.0 GTP
 7.196
 OD1
 O4'
ASP E:77 H:93 15.0 0.1 E -93.7 138.6 15.0 0.1 0.0 GTP
 6.373
 OD2
 O4'
ASP K:77 K:93 2.0 0.013 -131.0 88.2 2.0 0.013 0.0 GTP
 7.233
 OD2
 O1B
ASP M:77 U:93 16.0 0.107 E -94.9 132.9 16.0 0.107 0.0 GTP
 6.747
 OD2
 O4'
ASP S:77 L:93 4.0 0.027 -124.8 87.2 4.0 0.027 0.0 GTP
 6.965
 OD1
 O4'
ASP U:77 V:93 9.0 0.06 E -96.1 130.3 9.0 0.06 0.0 GTP
 6.587
 OD2
 O4'
7dn9 2 P84077 97.58 2e-119 X-RAY
 2021-12-15 ASP B:77 B:93 22.0 0.147 E -72.5 105.6 22.0 0.147 0.0 GDP
 6.289
 OD2
 O4'
ASP D:77 D:93 22.0 0.147 E -72.7 105.8 NA NA NA
ASP F:77 F:93 23.0 0.153 E -72.8 104.5 NA NA NA
ASP H:77 H:93 24.0 0.16 E -73.2 105.7 NA NA NA
6cm9 3 P84077 96.99 2e-119 EM
 2018-08-08 ASP D:105 C:93 7.0 0.047 -129.4 84.7 7.0 0.047 0.0 GTP
 6.930
 OD1
 O4'
ASP F:105 H:93 19.0 0.127 E -98.2 136.5 19.0 0.127 0.0 GTP
 6.604
 OD2
 O4'
6d83 3 P84077 96.99 2e-119 EM
 2018-08-08 ASP D:105 C:93 9.0 0.06 E -121.7 99.4 9.0 0.06 0.0 GTP
 6.351
 OD2
 O4'
ASP F:105 H:93 18.0 0.12 -96.0 140.3 18.0 0.12 0.0 GTP
 6.456
 OD2
 O4'
6d84 3 P84077 96.99 2e-119 EM
 2018-08-08 ASP D:105 C:93 10.0 0.067 E -109.9 111.1 10.0 0.067 0.0 GTP
 6.091
 OD2
 O4'
ASP F:105 H:93 13.0 0.087 E -91.4 125.9 13.0 0.087 0.0 GTP
 6.384
 OD2
 O4'
ASP L:105 I:93 11.0 0.073 E -113.4 109.4 11.0 0.073 0.0 GTP
 6.387
 OD2
 O4'
ASP N:105 N:93 16.0 0.107 E -98.5 131.4 16.0 0.107 0.0 GTP
 6.655
 OD2
 O4'
6dff 3 P84077 96.99 2e-119 EM
 2018-08-08 ASP D:105 C:93 4.0 0.027 -118.2 88.5 4.0 0.027 0.0 GTP
 7.955
 OD1
 O4'
ASP F:105 H:93 11.0 0.073 E -108.5 129.0 11.0 0.073 0.0 GTP
 6.573
 OD2
 O4'
1j2j 1 Q8BSL7 97.56 9e-119 X-RAY
 2003-05-06 ASP A:78 A:93 23.0 0.153 E -75.2 105.7 23.0 0.153 0.0 GTP
HOH
 6.148
2.707
 OD1
O
 O4'
O
1o3y 1 P84078 97.56 9e-119 X-RAY
 2003-05-20 ASP A:78 A:93 22.0 0.147 E -76.4 104.2 22.0 0.147 0.0 GTP
HOH
 6.308
2.710
 OD1
OD1
 O4'
O
ASP B:78 B:93 22.0 0.147 E -76.6 104.2 NA NA NA
2j59 1 P84078 97.56 9e-119 X-RAY
 2007-02-20 ASP A:78 A:93 22.0 0.147 E -79.6 103.8 22.0 0.147 0.0 GTP
HOH
 6.185
2.606
 OD2
OD2
 O4'
O
ASP B:78 B:93 21.0 0.14 E -79.7 103.9 NA NA NA
ASP C:78 C:93 22.0 0.147 E -78.7 106.1 NA NA NA
ASP D:78 D:93 21.0 0.14 E -74.7 106.7 NA NA NA
ASP E:78 E:93 20.0 0.133 E -78.8 106.4 NA NA NA
ASP F:78 F:93 21.0 0.14 E -79.1 104.4 NA NA NA
3aq4 1 P36397 87.78 3e-116 X-RAY
 2011-01-26 ASP A:96 A:93 25.0 0.167 E -76.0 107.9 25.0 0.167 0.0 GDP
HOH
 6.174
2.647
 OD2
OD2
 O4'
O
ASP B:96 B:93 25.0 0.167 E -80.2 109.3 NA NA NA
5uf8 1 Q5AND9 83.98 9e-113 X-RAY
 2017-01-25 ASP A:93 A:93 21.0 0.14 E -74.9 108.6 21.0 0.14 0.0 GDP
HOH
 6.304
2.372
 OD2
O
 O4'
O
ASP B:93 B:93 27.0 0.18 E -76.3 106.1 NA NA NA
ASP C:93 C:93 22.0 0.147 E -75.3 102.5 NA NA NA
ASP D:93 D:93 26.0 0.173 E -78.4 102.9 NA NA NA
6pta 1 P22274 83.62 2e-111 X-RAY
 2019-07-24 ASP A:93 A:93 25.0 0.167 E -82.0 101.3 25.0 0.167 0.0 GDP
HOH
 6.289
2.546
 OD2
OD2
 O4'
O
ASP B:93 B:93 29.0 0.193 E -79.7 101.8 NA NA NA
ASP C:93 C:93 21.0 0.14 E -72.2 108.8 21.0 0.14 0.0 GDP
HOH
 6.522
2.882
 OD2
N
 O4'
O
ASP D:93 D:93 20.0 0.133 E -71.3 108.4 NA NA NA
2b6h 1 P84085 80.57 5e-106 X-RAY
 2005-10-11 ASP A:105 A:93 25.0 0.167 E -79.5 102.3 25.0 0.167 0.0 GDP
UNX
UNX
HOH
 6.039
3.026
2.970
2.677
 OD2
N
O
OD2
 O4'
UNK
UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61204-f1 1 P61204 100.0 2e-134 ASP A:93 A:93 21.0 0.14 E -70.9 107.4
af-p84077-f1 1 P84077 96.13 2e-130 ASP A:93 A:93 21.0 0.14 E -71.2 107.4