wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr12	49333839	.	T	A	CCDS8774.1:NM_001659.2:c.200gAt>gTt_NP_001650.1:p.67D>V	Homo sapiens ADP ribosylation factor 3 (ARF3), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
1r8q	1	P84080	96.13	5e-130	X-RAY	2004-01-20	ASP	A:67	A:67	100.0	0.667		-81.6	120.0	53.0	0.353	0.314	B:Q99418:0.313	MG G3D AFB HOH	7.760 8.577 2.855 2.587	OD2 OD1 N OD2	MG O3B OC4 O
1r8q	1	P84080	96.13	5e-130	X-RAY	2004-01-20	ASP	C:67	B:67	96.0	0.64		-74.9	118.4	NA	NA	NA
1rrf	1	P84079	96.13	5e-130	X-RAY	1996-06-20	ASP	A:67	A:67	60.0	0.4	E	-67.0	162.4	60.0	0.4	0.0		MG GDP	4.659 3.877	OD1 OD2	MG O3B
1rrg	1	P84079	96.13	5e-130	X-RAY	1996-06-20	ASP	A:67	A:67	83.0	0.553	E	-77.1	162.1	83.0	0.553	0.0		MG MG GDP GDP HOH	4.626 9.020 3.983 8.807 2.694	OD1 OD2 OD1 OD2 OD2	MG MG O3B O2A O
1rrg	1	P84079	96.13	5e-130	X-RAY	1996-06-20	ASP	B:67	B:67	85.0	0.567	E	-83.4	146.7	85.0	0.567	0.0		MG MG GDP GDP HOH	8.825 4.119 9.000 4.203 2.502	OD2 OD1 OD2 OD1 OD2	MG MG O2A O3B O
1hur	1	P84077	96.11	4e-129	X-RAY	1995-07-10	ASP	A:66	A:67	81.0	0.54	E	-85.4	153.4	81.0	0.54	0.0		MG MG GDP GDP HOH	4.338 9.300 4.222 8.621 2.662	OD1 OD2 OD1 OD2 OD1	MG MG O2B O2A O
1hur	1	P84077	96.11	4e-129	X-RAY	1995-07-10	ASP	B:66	B:67	86.0	0.573	E	-87.5	143.9	86.0	0.573	0.0		MG MG GDP GDP HOH	9.585 4.380 8.699 4.138 2.746	OD2 OD1 OD2 OD1 OD1	MG MG O2A O2B O
3o47	1	Q8N6T3,P84077	96.51	1e-121	X-RAY	2010-08-11	ASP	A:215	A:197	80.0	0.533	E	-82.5	149.6	80.0	0.533	0.0		GDP	3.799	OD1	O2B
3o47	1	Q8N6T3,P84077	96.51	1e-121	X-RAY	2010-08-11	ASP	B:215	B:197	83.0	0.553	E	-82.5	149.7	NA	NA	NA
7dn8	2	P84077	96.43	1e-120	X-RAY	2021-12-15	ASP	B:55	D:67	0.0	0.0	E	-94.5	96.0	0.0	0.0	0.0		MG GDP HOH	3.873 4.532 2.508	OD2 OD1 OD1	MG O2B O
							ASP	D:55	B:67	0.0	0.0	E	-94.5	96.6	NA	NA	NA
							ASP	F:55	F:67	0.0	0.0	E	-94.4	95.4	NA	NA	NA
							ASP	H:55	H:67	0.0	0.0	E	-94.5	96.8	NA	NA	NA
6ii6	2	P61204	98.19	2e-120	X-RAY	2019-08-07	ASP	C:55	C:67	0.0	0.0	E	-93.2	104.3	0.0	0.0	0.0		GTP MG HOH	4.330 4.029 2.623	OD1 OD2 OD1	O2B MG O
6ii6	2	P61204	98.19	2e-120	X-RAY	2019-08-07	ASP	D:55	D:67	1.0	0.007	E	-101.5	106.2	NA	NA	NA
7mge	4	P84077	98.17	3e-120	EM	2021-06-23	ASP	D:53	E:67	0.0	0.0	E	-66.8	142.0	0.0	0.0	0.0		GDP BEF MG	4.470 2.800 5.539	OD1 OD1 OD1	O1B F1 MG
1r8s	1	P84080	98.17	4e-120	X-RAY	2004-01-20	ASP	A:50	A:67	35.0	0.233	E	-98.2	94.2	7.0	0.047	0.186	B:Q99418:0.187	GDP SO4 SO3 HOH	5.050 7.153 7.268 2.732	OD2 OD2 OD2 O	O1B O3 O1 O
1re0	1	P32889	98.17	4e-120	X-RAY	2003-12-16	ASP	A:50	A:67	115.0	0.767		-71.4	121.6	70.0	0.467	0.3	B:P47102:0.3	MG GDP AFB HOH	6.125 7.124 3.157 2.326	OD1 OD1 N OD1	MG O3B OC4 O
1s9d	1	P84080	98.17	4e-120	X-RAY	2004-02-10	ASP	A:50	A:67	103.0	0.687		-79.9	112.8	57.0	0.38	0.307	B:Q99418:0.307	MG GDP AFB HOH	7.610 8.481 2.856 2.555	OD2 OD1 N O	MG O3B OC4 O
1u81	1	P84077	98.17	4e-120	NMR	2004-10-05	ASP	A:50	A:67	61.0	0.407		-130.1	178.5	61.0	0.407	0.0		MG GDP	4.477 4.817	OD1 OD2	MG O3B
4c0a	2	P84080	98.17	4e-120	X-RAY	2013-09-25	ASP	C:50	C:67	9.0	0.06	E	-94.2	97.4	NA	NA	NA
							ASP	D:50	D:67	11.0	0.073	E	-96.9	103.1	NA	NA	NA
							ASP	G:50	G:67	11.0	0.073	E	-94.4	98.5	2.0	0.013	0.06	B:Q6DN90:0.06	G3D	4.136	OD1	O1B
							ASP	H:50	H:67	15.0	0.1		-63.6	-11.3	NA	NA	NA
6fae	2	P84077	96.99	1e-119	X-RAY	2018-01-17	ASP	B:99	B:67	24.0	0.16	E	-89.0	116.1	0.0	0.0	0.16	A:Q5JU85:0.16	HOH	2.992	OD2	O
4hmy	5	P84077	97.58	1e-119	X-RAY	2013-03-06	ASP	E:58	C:67	1.0	0.007	E	-88.6	94.6	1.0	0.007	0.0		GTP MG	3.694 4.487	OD1 OD1	O2B MG
6cri	3	P84077	97.58	2e-119	EM	2018-08-01	ASP	C:51	C:67	1.0	0.007	E	-93.1	134.3	1.0	0.007	0.0		GTP MG	3.880 4.174	OD2 OD2	O3G MG
							ASP	E:51	H:67	0.0	0.0	E	-68.7	127.3	0.0	0.0	0.0		GTP MG	4.601 4.470	OD2 OD2	O1G MG
							ASP	K:51	K:67	0.0	0.0	E	-94.7	136.6	0.0	0.0	0.0		GTP MG	3.771 4.130	OD2 OD2	O3G MG
							ASP	M:51	U:67	0.0	0.0	E	-67.7	130.5	0.0	0.0	0.0		GTP MG	4.616 4.487	OD2 OD2	O1G MG
							ASP	S:51	L:67	0.0	0.0	E	-82.2	131.9	0.0	0.0	0.0		GTP MG	3.841 4.154	OD2 OD2	O3G MG
							ASP	U:51	V:67	0.0	0.0	E	-69.9	124.2	0.0	0.0	0.0		GTP MG	4.570 4.414	OD2 OD2	O1G MG
7dn9	2	P84077	97.58	2e-119	X-RAY	2021-12-15	ASP	B:51	B:67	0.0	0.0	E	-84.1	95.6	0.0	0.0	0.0		MG GDP	5.299 4.563	OD2 OD2	MG O3B
							ASP	D:51	D:67	0.0	0.0	E	-84.1	94.8	NA	NA	NA
							ASP	F:51	F:67	0.0	0.0	E	-84.1	95.2	NA	NA	NA
							ASP	H:51	H:67	0.0	0.0	E	-84.6	95.8	NA	NA	NA
6cm9	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	D:79	C:67	0.0	0.0	E	-77.6	138.3	0.0	0.0	0.0		GTP MG	4.809 3.783	OD2 OD2	O1B MG
6cm9	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	F:79	H:67	0.0	0.0	E	-56.9	112.1	0.0	0.0	0.0		GTP MG	5.203 4.672	OD1 OD2	O2B MG
6d83	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	D:79	C:67	0.0	0.0	E	-84.4	132.4	0.0	0.0	0.0		GTP MG	4.566 4.186	OD2 OD2	O1G MG
6d83	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	F:79	H:67	0.0	0.0	E	-76.5	119.2	0.0	0.0	0.0		GTP MG	4.736 4.771	OD2 OD2	O1G MG
6d84	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	D:79	C:67	0.0	0.0	E	-68.7	138.4	0.0	0.0	0.0		GTP MG	4.372 4.200	OD2 OD2	O1G MG
							ASP	F:79	H:67	0.0	0.0	E	-73.0	124.0	0.0	0.0	0.0		GTP MG	4.699 4.825	OD2 OD2	O1G MG
							ASP	L:79	I:67	1.0	0.007	E	-72.1	135.9	1.0	0.007	0.0		GTP MG	4.484 4.324	OD2 OD2	O3G MG
							ASP	N:79	N:67	0.0	0.0	E	-71.0	115.1	0.0	0.0	0.0		GTP MG	4.890 4.825	OD2 OD2	O3G MG
6dff	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	D:79	C:67	0.0	0.0	E	-80.3	135.3	0.0	0.0	0.0		GTP MG	4.383 4.598	OD2 OD2	O1B MG
6dff	3	P84077	96.99	2e-119	EM	2018-08-08	ASP	F:79	H:67	0.0	0.0	E	-65.8	117.8	0.0	0.0	0.0		GTP MG	5.567 4.768	OD1 OD2	O1B MG
1j2j	1	Q8BSL7	97.56	9e-119	X-RAY	2003-05-06	ASP	A:52	A:67	0.0	0.0	E	-91.8	107.6	0.0	0.0	0.0		MG GTP HOH	4.055 4.375 2.671	OD2 OD1 OD1	MG O2B O
1o3y	1	P84078	97.56	9e-119	X-RAY	2003-05-20	ASP	A:52	A:67	0.0	0.0	E	-96.9	104.3	0.0	0.0	0.0		MG GTP HOH	4.076 4.387 2.567	OD2 OD1 OD1	MG O2B O
1o3y	1	P84078	97.56	9e-119	X-RAY	2003-05-20	ASP	B:52	B:67	0.0	0.0	E	-105.2	105.1	NA	NA	NA
2j59	1	P84078	97.56	9e-119	X-RAY	2007-02-20	ASP	A:52	A:67	1.0	0.007	E	-89.3	106.4	1.0	0.007	0.0		GTP MG HOH	4.231 4.045 2.524	OD1 OD2 OD1	O2B MG O
							ASP	B:52	B:67	0.0	0.0	E	-94.1	107.9	NA	NA	NA
							ASP	C:52	C:67	0.0	0.0	E	-95.3	111.7	NA	NA	NA
							ASP	D:52	D:67	1.0	0.007	E	-96.8	108.8	NA	NA	NA
							ASP	E:52	E:67	0.0	0.0	E	-100.2	109.1	NA	NA	NA
							ASP	F:52	F:67	0.0	0.0	E	-93.6	112.1	NA	NA	NA
3aq4	1	P36397	87.78	3e-116	X-RAY	2011-01-26	ASP	A:70	A:67	85.0	0.567	E	-89.1	138.2	85.0	0.567	0.0		MG GDP HOH	4.243 4.120 2.649	OD1 OD1 OD2	MG O3B O
3aq4	1	P36397	87.78	3e-116	X-RAY	2011-01-26	ASP	B:70	B:67	90.0	0.6	E	-91.1	136.3	NA	NA	NA
5uf8	1	Q5AND9	83.98	9e-113	X-RAY	2017-01-25	ASP	A:67	A:67	90.0	0.6	E	-81.5	135.4	90.0	0.6	0.0		GDP HOH	3.910 2.334	OD1 O	O1B O
							ASP	B:67	B:67	88.0	0.587	E	-80.9	148.6	NA	NA	NA
							ASP	C:67	C:67	88.0	0.587	E	-85.1	134.7	NA	NA	NA
							ASP	D:67	D:67	85.0	0.567	E	-79.9	146.9	NA	NA	NA
6pta	1	P22274	83.62	2e-111	X-RAY	2019-07-24	ASP	A:67	A:67	87.0	0.58	E	-79.0	147.4	87.0	0.58	0.0		GDP GDP HOH	3.890 8.547 4.985	OD1 OD2 OD2	O2B O1A O
							ASP	B:67	B:67	84.0	0.56	E	-78.2	152.8	NA	NA	NA
							ASP	C:67	C:67	86.0	0.573	E	-88.6	142.9	86.0	0.573	0.0		GDP GDP HOH	8.539 3.791 2.783	OD2 OD1 N	O2A O2B O
							ASP	D:67	D:67	89.0	0.593	E	-80.7	146.6	NA	NA	NA
2b6h	1	P84085	80.57	5e-106	X-RAY	2005-10-11	ASP	A:79	A:67	94.0	0.627	E	-86.4	141.2	94.0	0.627	0.0		GDP UNX HOH	4.185 9.131 2.802	OD1 OD1 O	O1B UNK O

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p61204-f1	1	P61204	100.0	2e-134	ASP	A:67	A:67	1.0	0.007	E	-77.5	96.6
af-p84077-f1	1	P84077	96.13	2e-130	ASP	A:67	A:67	1.0	0.007	E	-76.1	82.1

wupsivus
	HOME ABOUT EXAMPLE HELP