Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 49334784 . G A CCDS8774.1:NM_001659.2:c.95aCc>aTc_NP_001650.1:p.32T>I Homo sapiens ADP ribosylation factor 3 (ARF3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1r8q 1 P84080 96.13 5e-130 X-RAY
 2004-01-20 THR A:32 A:32 49.0 0.35 H -62.7 -44.7 49.0 0.35 0.0 MG
G3D
HOH
 5.857
2.636
5.223
 N
OG1
N
 MG
O1A
O
THR C:32 B:32 51.0 0.364 H -65.0 -43.2 NA NA NA
1rrf 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 THR A:32 A:32 52.0 0.371 H -59.8 -30.8 52.0 0.371 0.0 MG
GDP
 6.305
2.720
 N
OG1
 MG
O1A
1rrg 1 P84079 96.13 5e-130 X-RAY
 1996-06-20 THR A:32 A:32 55.0 0.393 H -70.3 -39.2 33.0 0.236 0.157 B:P84079:0.157
 MG
GDP
HOH
 6.670
2.652
3.348
 N
OG1
OG1
 MG
O1A
O
THR B:32 B:32 53.0 0.379 H -70.5 -39.4 34.0 0.243 0.136 A:P84079:0.136
 MG
GDP
HOH
 6.518
2.533
3.254
 N
OG1
OG1
 MG
O1A
O
1hur 1 P84077 96.11 4e-129 X-RAY
 1995-07-10 THR A:31 A:32 59.0 0.421 H -55.5 -43.2 35.0 0.25 0.171 B:P84077:0.171
 MG
GDP
HOH
 6.430
2.765
3.649
 N
OG1
OG1
 MG
O1A
O
THR B:31 B:32 60.0 0.429 H -56.5 -52.4 39.0 0.279 0.15 A:P84077:0.15
 MG
GDP
HOH
 6.352
2.660
3.093
 N
OG1
OG1
 MG
O1A
O
3o47 1 Q8N6T3,P84077 96.51 1e-121 X-RAY
 2010-08-11 THR A:180 A:162 57.0 0.407 H -61.1 -50.5 57.0 0.407 0.0 GDP
 2.634
 OG1
 O1A
THR B:180 B:162 62.0 0.443 H -63.4 -46.2 NA NA NA
7dn8 2 P84077 96.43 1e-120 X-RAY
 2021-12-15 THR B:20 D:32 36.0 0.257 H -59.0 -39.5 36.0 0.257 0.0 MG
GDP
HOH
 6.013
2.763
5.899
 N
OG1
N
 MG
O1A
O
THR D:20 B:32 37.0 0.264 H -59.1 -39.1 NA NA NA
THR F:20 F:32 37.0 0.264 H -58.7 -39.4 NA NA NA
THR H:20 H:32 39.0 0.279 H -59.0 -39.8 NA NA NA
6ii6 2 P61204 98.19 2e-120 X-RAY
 2019-08-07 THR C:20 C:32 22.0 0.157 H -60.0 -47.9 22.0 0.157 0.0 GTP
MG
HOH
 2.804
5.729
2.526
 OG1
N
OG1
 O2A
MG
O
THR D:20 D:32 27.0 0.193 H -67.9 -43.4 NA NA NA
7mge 4 P84077 98.17 3e-120 EM
 2021-06-23 THR D:18 E:32 27.0 0.193 H -64.5 -31.5 27.0 0.193 0.0 GDP
BEF
MG
 3.823
5.805
6.670
 OG1
N
N
 C8
F2
MG
1r8s 1 P84080 98.17 4e-120 X-RAY
 2004-01-20 THR A:15 A:32 54.0 0.386 H -63.6 -42.1 54.0 0.386 0.0 GDP
SO4
SO3
HOH
 2.686
9.833
7.832
2.573
 OG1
N
N
OG1
 O1A
O3
O1
O
1re0 1 P32889 98.17 4e-120 X-RAY
 2003-12-16 THR A:15 A:32 56.0 0.4 H -58.7 -43.3 56.0 0.4 0.0 MG
GDP
HOH
 5.781
2.654
5.715
 N
OG1
N
 MG
O1A
O
1s9d 1 P84080 98.17 4e-120 X-RAY
 2004-02-10 THR A:15 A:32 54.0 0.386 H -54.9 -46.2 54.0 0.386 0.0 MG
GDP
HOH
 5.801
2.651
2.587
 N
OG1
O
 MG
O1A
O
1u81 1 P84077 98.17 4e-120 NMR
 2004-10-05 THR A:15 A:32 56.0 0.4 H -66.7 -58.9 56.0 0.4 0.0 MG
GDP
 8.885
2.498
 H
H
 MG
O1A
4c0a 2 P84080 98.17 4e-120 X-RAY
 2013-09-25 THR C:15 C:32 66.0 0.471 H -59.3 -45.2 NA NA NA
THR D:15 D:32 60.0 0.429 H -58.0 -46.4 NA NA NA
THR G:15 G:32 70.0 0.5 H -59.3 -44.8 70.0 0.5 0.0 G3D
 2.427
 N
 O2A
THR H:15 H:32 63.0 0.45 H -59.8 -44.4 NA NA NA
6fae 2 P84077 96.99 1e-119 X-RAY
 2018-01-17 THR B:64 B:32 64.0 0.457 H -59.2 -49.1 64.0 0.457 0.0 HOH
 5.441
 N
 O
4hmy 5 P84077 97.58 1e-119 X-RAY
 2013-03-06 THR E:23 C:32 33.0 0.236 H -45.8 -45.0 33.0 0.236 0.0 GTP
MG
 2.751
5.737
 OG1
N
 O1A
MG
6cri 3 P84077 97.58 2e-119 EM
 2018-08-01 THR C:16 C:32 33.0 0.236 H -67.4 -50.2 33.0 0.236 0.0 GTP
MG
 2.731
5.451
 OG1
N
 O1A
MG
THR E:16 H:32 32.0 0.229 H -65.4 -40.6 32.0 0.229 0.0 GTP
MG
 2.454
5.403
 N
N
 O1A
MG
THR K:16 K:32 31.0 0.221 H -69.1 -49.5 31.0 0.221 0.0 GTP
MG
 2.845
5.520
 OG1
N
 O1A
MG
THR M:16 U:32 30.0 0.214 H -63.9 -38.4 30.0 0.214 0.0 GTP
MG
 2.460
5.392
 N
N
 O1A
MG
THR S:16 L:32 31.0 0.221 H -75.4 -44.3 31.0 0.221 0.0 GTP
MG
 2.865
5.559
 OG1
N
 O1A
MG
THR U:16 V:32 28.0 0.2 H -67.0 -38.9 28.0 0.2 0.0 GTP
MG
 2.608
5.448
 N
N
 O1A
MG
7dn9 2 P84077 97.58 2e-119 X-RAY
 2021-12-15 THR B:16 B:32 37.0 0.264 H -65.7 -41.7 37.0 0.264 0.0 MG
GDP
 7.311
2.859
 N
OG1
 MG
O1A
THR D:16 D:32 37.0 0.264 H -65.5 -42.1 NA NA NA
THR F:16 F:32 37.0 0.264 H -65.2 -42.2 NA NA NA
THR H:16 H:32 38.0 0.271 H -65.0 -42.2 NA NA NA
6cm9 3 P84077 96.99 2e-119 EM
 2018-08-08 THR D:44 C:32 33.0 0.236 H -58.1 -58.4 33.0 0.236 0.0 GTP
MG
 3.071
5.835
 OG1
N
 O1A
MG
THR F:44 H:32 29.0 0.207 H -66.0 -41.2 29.0 0.207 0.0 GTP
MG
 2.837
5.309
 OG1
N
 O1A
MG
6d83 3 P84077 96.99 2e-119 EM
 2018-08-08 THR D:44 C:32 36.0 0.257 H -64.1 -50.5 36.0 0.257 0.0 GTP
MG
 2.784
5.649
 OG1
N
 O1A
MG
THR F:44 H:32 29.0 0.207 H -62.0 -43.0 29.0 0.207 0.0 GTP
MG
 2.720
5.305
 OG1
N
 O1A
MG
6d84 3 P84077 96.99 2e-119 EM
 2018-08-08 THR D:44 C:32 31.0 0.221 H -60.0 -49.6 31.0 0.221 0.0 GTP
MG
 2.739
5.498
 OG1
N
 O1A
MG
THR F:44 H:32 27.0 0.193 H -63.8 -42.9 27.0 0.193 0.0 GTP
MG
 2.585
5.318
 OG1
N
 O1A
MG
THR L:44 I:32 37.0 0.264 H -64.0 -47.7 37.0 0.264 0.0 GTP
MG
 2.549
5.580
 OG1
N
 O2A
MG
THR N:44 N:32 30.0 0.214 H -60.6 -43.2 30.0 0.214 0.0 GTP
MG
 2.518
5.349
 OG1
N
 O2A
MG
6dff 3 P84077 96.99 2e-119 EM
 2018-08-08 THR D:44 C:32 30.0 0.214 H -61.8 -51.2 30.0 0.214 0.0 GTP
MG
 2.631
5.746
 N
N
 O1A
MG
THR F:44 H:32 30.0 0.214 H -66.1 -42.0 30.0 0.214 0.0 GTP
MG
 2.430
5.400
 OG1
N
 O1A
MG
1j2j 1 Q8BSL7 97.56 9e-119 X-RAY
 2003-05-06 THR A:17 A:32 32.0 0.229 H -58.4 -46.6 32.0 0.229 0.0 MG
GTP
HOH
 5.753
2.758
2.825
 N
OG1
O
 MG
O1A
O
1o3y 1 P84078 97.56 9e-119 X-RAY
 2003-05-20 THR A:17 A:32 25.0 0.179 H -58.2 -45.6 25.0 0.179 0.0 MG
GTP
HOH
 5.875
2.804
2.792
 N
OG1
O
 MG
O1A
O
THR B:17 B:32 24.0 0.171 H -59.2 -47.5 NA NA NA
2j59 1 P84078 97.56 9e-119 X-RAY
 2007-02-20 THR A:17 A:32 25.0 0.179 H -54.0 -45.4 25.0 0.179 0.0 GTP
MG
HOH
 2.771
5.762
2.682
 OG1
N
O
 O1A
MG
O
THR B:17 B:32 24.0 0.171 H -54.2 -50.4 NA NA NA
THR C:17 C:32 25.0 0.179 H -53.5 -50.3 NA NA NA
THR D:17 D:32 25.0 0.179 H -54.9 -47.3 NA NA NA
THR E:17 E:32 24.0 0.171 H -57.1 -46.9 NA NA NA
THR F:17 F:32 25.0 0.179 H -55.9 -45.7 NA NA NA
3aq4 1 P36397 87.78 3e-116 X-RAY
 2011-01-26 THR A:35 A:32 60.0 0.429 H -56.7 -48.1 60.0 0.429 0.0 MG
GDP
HOH
 5.860
2.682
2.971
 N
OG1
O
 MG
O1A
O
THR B:35 B:32 61.0 0.436 H -60.4 -47.8 NA NA NA
5uf8 1 Q5AND9 83.98 9e-113 X-RAY
 2017-01-25 THR A:32 A:32 54.0 0.386 H -59.2 -39.6 54.0 0.386 0.0 GDP
HOH
 2.623
2.852
 OG1
O
 O2A
O
THR B:32 B:32 59.0 0.421 H -60.9 -41.3 NA NA NA
THR C:32 C:32 58.0 0.414 H -62.7 -40.6 NA NA NA
THR D:32 D:32 60.0 0.429 H -60.5 -39.9 NA NA NA
6pta 1 P22274 83.62 2e-111 X-RAY
 2019-07-24 THR A:32 A:32 51.0 0.364 H -67.4 -44.3 31.0 0.221 0.143 C:P22274:0.143
 GDP
HOH
 2.764
7.680
 N
O
 O1A
O
THR B:32 B:32 54.0 0.386 H -63.1 -43.9 NA NA NA
THR C:32 C:32 60.0 0.429 H -63.7 -40.2 39.0 0.279 0.15 A:P22274:0.15
 GDP
HOH
 2.694
7.101
 OG1
N
 O2A
O
THR D:32 D:32 66.0 0.471 H -64.2 -38.1 NA NA NA
2b6h 1 P84085 80.57 5e-106 X-RAY
 2005-10-11 THR A:44 A:32 57.0 0.407 H -52.8 -45.1 57.0 0.407 0.0 GDP
HOH
 2.635
2.999
 OG1
O
 O2A
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61204-f1 1 P61204 100.0 2e-134 THR A:32 A:32 22.0 0.157 H -64.2 -46.8
af-p84077-f1 1 P84077 96.13 2e-130 THR A:32 A:32 27.0 0.193 H -63.0 -44.8