Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 56383751 . G A CCDS8900.1:NM_001252036.1:c.184Gtt>Att_NP_001238965.1:p.62V>I Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hei 1 P61020 100.0 7e-132 X-RAY
 2006-07-04 VAL A:50 A:62 20.0 0.129 E -134.0 135.9 20.0 0.129 0.0 HOH
 3.965
 CG2
 O
VAL B:50 B:62 17.0 0.11 E -132.5 128.4 17.0 0.11 0.0 HOH
 3.408
 CA
 O
4q9u 2 P20339 89.35 6e-115 X-RAY
 2014-07-23 VAL B:49 B:62 21.0 0.135 E -130.4 144.3 21.0 0.135 0.0
VAL F:49 NA:NA DO NA DO DO DO NA NA NA
1tu3 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 VAL A:49 A:62 35.0 0.226 E -122.9 131.6 35.0 0.226 0.0 HOH
 6.064
 N
 O
VAL B:49 B:62 29.0 0.187 E -132.8 129.3 29.0 0.187 0.0 HOH
 5.608
 CG2
 O
VAL C:49 C:62 31.0 0.2 E -132.8 111.7 NA NA NA
VAL D:49 D:62 73.0 0.471 -143.7 166.5 NA NA NA
VAL E:49 E:62 35.0 0.226 E -140.1 148.7 NA NA NA
1tu4 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 VAL A:49 A:62 0.0 0.0 E -149.8 134.6 0.0 0.0 0.0 HOH
 5.591
 CG2
 O
VAL B:49 B:62 28.0 0.181 E -132.1 166.3 NA NA NA
VAL C:49 C:62 0.0 0.0 E -129.6 136.5 NA NA NA
VAL D:49 D:62 31.0 0.2 E -134.0 -178.4 NA NA NA
1n6h 1 P20339 89.35 7e-115 X-RAY
 2002-11-27 VAL A:48 A:62 28.0 0.181 E -130.3 171.5 28.0 0.181 0.0 BME
HOH
 5.416
3.392
 O
CB
 C2
O
1r2q 1 P20339 89.35 7e-115 X-RAY
 2003-12-23 VAL A:48 A:62 20.0 0.129 E -131.6 161.0 20.0 0.129 0.0 HOH
 3.301
 CA
 O
1n6o 1 P20339 88.76 4e-114 X-RAY
 2002-11-27 VAL A:48 A:62 21.0 0.135 E -132.0 166.2 21.0 0.135 0.0 BME
HOH
 5.430
3.421
 O
CA
 C2
O
1n6r 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 VAL A:48 A:62 23.0 0.148 E -128.9 169.1 23.0 0.148 0.0 BME
HOH
 5.514
3.443
 O
CA
 C2
O
1n6p 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 VAL A:48 A:62 11.0 0.071 E -124.3 157.8 11.0 0.071 0.0 HOH
 3.509
 CA
 O
1n6i 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 VAL A:48 A:62 27.0 0.174 E -133.8 173.6 27.0 0.174 0.0 BME
HOH
 5.427
3.425
 O
CB
 C2
O
1n6k 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 VAL A:48 A:62 26.0 0.168 E -132.2 170.8 26.0 0.168 0.0 BME
HOH
 5.556
3.491
 O
CA
 C2
O
1n6l 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 VAL A:48 A:62 24.0 0.155 E -129.9 166.7 24.0 0.155 0.0 BME
HOH
 5.561
3.486
 O
CA
 C2
O
1n6n 1 P20339 88.76 8e-114 X-RAY
 2002-11-27 VAL A:48 A:62 27.0 0.174 E -132.5 170.2 27.0 0.174 0.0 BME
HOH
 5.480
3.419
 O
CB
 C2
O
3mjh 1 P20339 89.29 1e-113 X-RAY
 2010-05-05 VAL A:47 A:62 18.0 0.116 E -133.1 161.3 18.0 0.116 0.0 HOH
 3.213
 C
 O
VAL C:47 C:62 10.0 0.065 E -117.5 126.9 NA NA NA
4kyi 2 P51148 92.17 2e-113 X-RAY
 2014-08-13 VAL B:51 B:63 27.0 0.174 E -119.7 157.0 27.0 0.174 0.0
VAL D:51 D:63 22.0 0.142 E -136.4 145.2 NA NA NA
VAL F:51 F:63 20.0 0.129 E -120.5 158.9 NA NA NA
VAL H:51 H:63 19.0 0.123 E -121.4 158.9 NA NA NA
1huq 1 P35278 92.68 2e-113 X-RAY
 2001-02-07 VAL A:45 A:63 19.0 0.123 E -123.8 160.6 19.0 0.123 0.0 HOH
 3.695
 CB
 O
1z0d 1 P35278 92.12 2e-113 X-RAY
 2005-07-26 VAL A:47 A:63 12.0 0.077 E -115.1 157.9 12.0 0.077 0.0 HOH
 3.358
 CG1
 O
VAL B:47 C:63 14.0 0.09 E -127.4 160.5 NA NA NA
1z07 1 P35278 92.07 5e-112 X-RAY
 2005-07-26 VAL A:47 A:63 24.0 0.155 E -130.1 171.0 24.0 0.155 0.0 HOH
 3.427
 CB
 O
7bl1 6 P20339 88.1 2e-111 EM
 2021-03-03 VAL F:47 DDD:62 15.0 0.097 E -128.9 160.4 15.0 0.097 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61020-f1 1 P61020 100.0 6e-164 VAL A:62 A:62 20.0 0.129 E -120.3 125.9
af-p51148-f1 1 P51148 86.12 8e-137 VAL A:63 A:63 13.0 0.084 E -120.0 136.1
af-p20339-f1 1 P20339 81.86 1e-135 VAL A:62 A:62 13.0 0.084 E -120.1 136.6