Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 56383856 | . | A | C | CCDS8900.1:NM_001252036.1:c.289Atc>Ctc_NP_001238965.1:p.97I>L | Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 2hei | 1 | P61020 | 100.0 | 7e-132 |
X-RAY |
2006-07-04 | ILE | A:85 | A:97 | 3.0 | 0.017 | E | -118.2 | 119.9 | 3.0 | 0.017 | 0.0 |
GDP D1D HOH |
9.473 9.841 7.266 |
O O O |
O2B C1 O |
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| ILE | B:85 | B:97 | 2.0 | 0.011 | E | -119.0 | 124.9 | 2.0 | 0.011 | 0.0 |
GDP D1D HOH |
9.564 9.725 7.242 |
O O O |
O2B C2 O |
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| 4q9u | 2 | P20339 | 89.35 | 6e-115 |
X-RAY |
2014-07-23 | ILE | B:84 | B:97 | 38.0 | 0.217 | E | -148.1 | 136.3 | 38.0 | 0.217 | 0.0 | ||||||
| ILE | F:84 | F:97 | 18.0 | 0.103 | E | -131.9 | 174.1 | 18.0 | 0.103 | 0.0 | |||||||||||||
| 1tu3 | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2004-10-05 | ILE | A:84 | A:97 | 3.0 | 0.017 | E | -116.1 | 124.7 | 3.0 | 0.017 | 0.0 |
GNP HOH |
9.632 7.416 |
O O |
O1B O |
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| ILE | B:84 | B:97 | 0.0 | 0.0 | E | -118.7 | 119.1 | 0.0 | 0.0 | 0.0 |
GNP HOH |
9.677 7.378 |
O O |
O1B O |
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| ILE | C:84 | C:97 | 1.0 | 0.006 | E | -114.7 | 120.2 | NA | NA | NA | |||||||||||||
| ILE | D:84 | D:97 | 2.0 | 0.011 | E | -101.2 | 127.1 | NA | NA | NA | |||||||||||||
| ILE | E:84 | E:97 | 2.0 | 0.011 | E | -109.4 | 116.9 | NA | NA | NA | |||||||||||||
| 1tu4 | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2004-10-05 | ILE | A:84 | A:97 | 1.0 | 0.006 | E | -118.0 | 117.6 | 1.0 | 0.006 | 0.0 |
GDP HOH |
9.350 7.538 |
O O |
O2B O |
||
| ILE | B:84 | B:97 | 3.0 | 0.017 | E | -112.0 | 125.1 | NA | NA | NA | |||||||||||||
| ILE | C:84 | C:97 | 1.0 | 0.006 | E | -123.7 | 114.7 | NA | NA | NA | |||||||||||||
| ILE | D:84 | D:97 | 0.0 | 0.0 | E | -116.8 | 110.8 | NA | NA | NA | |||||||||||||
| 1n6h | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 1.0 | 0.006 | E | -120.8 | 115.0 | 1.0 | 0.006 | 0.0 |
GNP HOH |
9.426 7.372 |
O O |
O1B O |
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| 1r2q | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2003-12-23 | ILE | A:83 | A:97 | 1.0 | 0.006 | E | -115.7 | 119.9 | 1.0 | 0.006 | 0.0 |
GNP HOH |
9.497 7.357 |
O O |
O1B O |
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| 1n6o | 1 | P20339 | 88.76 | 4e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 2.0 | 0.011 | E | -120.3 | 117.2 | 2.0 | 0.011 | 0.0 |
GNP HOH |
9.469 7.458 |
O O |
O1B O |
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| 1n6r | 1 | P20339 | 88.76 | 5e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 2.0 | 0.011 | E | -119.9 | 116.0 | 2.0 | 0.011 | 0.0 |
GNP HOH |
9.488 7.431 |
O O |
O1B O |
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| 1n6p | 1 | P20339 | 88.76 | 5e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 2.0 | 0.011 | E | -121.1 | 115.2 | 2.0 | 0.011 | 0.0 |
GNP HOH |
9.438 7.435 |
O O |
O1B O |
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| 1n6i | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 0.0 | 0.0 | E | -122.2 | 116.6 | 0.0 | 0.0 | 0.0 |
GDP HOH |
9.788 7.431 |
O O |
O2B O |
||
| 1n6k | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 2.0 | 0.011 | E | -120.7 | 116.3 | 2.0 | 0.011 | 0.0 |
GDP HOH |
9.478 7.394 |
O O |
O1B O |
||
| 1n6l | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 1.0 | 0.006 | E | -119.9 | 117.7 | 1.0 | 0.006 | 0.0 |
GTP HOH |
9.508 7.416 |
O O |
O1B O |
||
| 1n6n | 1 | P20339 | 88.76 | 8e-114 |
X-RAY |
2002-11-27 | ILE | A:83 | A:97 | 2.0 | 0.011 | E | -120.7 | 115.2 | 2.0 | 0.011 | 0.0 |
GNP HOH |
9.451 7.419 |
O O |
O1B O |
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| 3mjh | 1 | P20339 | 89.29 | 1e-113 |
X-RAY |
2010-05-05 | ILE | A:82 | A:97 | 0.0 | 0.0 | E | -119.3 | 118.0 | 0.0 | 0.0 | 0.0 |
GTP HOH |
9.302 7.374 |
O O |
O1B O |
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| ILE | C:82 | C:97 | 1.0 | 0.006 | E | -113.4 | 113.4 | NA | NA | NA | |||||||||||||
| 4kyi | 2 | P51148 | 92.17 | 2e-113 |
X-RAY |
2014-08-13 | ILE | B:86 | B:98 | 1.0 | 0.006 | E | -100.7 | 111.5 | 1.0 | 0.006 | 0.0 |
GNP |
9.491 |
O |
O1B |
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| ILE | D:86 | D:98 | 3.0 | 0.017 | E | -131.5 | 104.0 | NA | NA | NA | |||||||||||||
| ILE | F:86 | F:98 | 2.0 | 0.011 | E | -122.9 | 104.5 | NA | NA | NA | |||||||||||||
| ILE | H:86 | H:98 | 1.0 | 0.006 | E | -121.0 | 122.6 | NA | NA | NA | |||||||||||||
| 1huq | 1 | P35278 | 92.68 | 2e-113 |
X-RAY |
2001-02-07 | ILE | A:80 | A:98 | 3.0 | 0.017 | E | -120.9 | 112.3 | 3.0 | 0.017 | 0.0 |
GNP HOH |
9.514 7.380 |
O O |
O1B O |
||
| 1z0d | 1 | P35278 | 92.12 | 2e-113 |
X-RAY |
2005-07-26 | ILE | A:82 | A:98 | 1.0 | 0.006 | E | -110.2 | 114.8 | 1.0 | 0.006 | 0.0 |
GDP HOH |
9.138 7.113 |
O O |
O1B O |
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| ILE | B:82 | C:98 | 1.0 | 0.006 | E | -111.1 | 119.3 | NA | NA | NA | |||||||||||||
| 1z07 | 1 | P35278 | 92.07 | 5e-112 |
X-RAY |
2005-07-26 | ILE | A:82 | A:98 | 3.0 | 0.017 | E | -112.2 | 114.4 | 3.0 | 0.017 | 0.0 |
GNP HOH |
9.553 7.414 |
O CD1 |
O1B O |
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| 7bl1 | 6 | P20339 | 88.1 | 2e-111 |
EM |
2021-03-03 | ILE | F:82 | DDD:97 | 0.0 | 0.0 | E | -117.2 | 118.0 | 0.0 | 0.0 | 0.0 |
GTP |
9.331 |
O |
O1B |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p61020-f1 | 1 | P61020 | 100.0 | 6e-164 | ILE | A:97 | A:97 | 1.0 | 0.006 | E | -112.3 | 116.4 | |
| af-p51148-f1 | 1 | P51148 | 86.12 | 8e-137 | ILE | A:98 | A:98 | 3.0 | 0.017 | E | -111.9 | 116.0 | |
| af-p20339-f1 | 1 | P20339 | 81.86 | 1e-135 | ILE | A:97 | A:97 | 2.0 | 0.011 | E | -111.3 | 114.7 | |