Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 56384535 . G A CCDS8900.1:NM_001252036.1:c.385Gcc>Acc_NP_001238965.1:p.129A>T Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hei 1 P61020 100.0 7e-132 X-RAY
 2006-07-04 ALA A:117 A:129 0.0 0.0 E -117.2 146.8 0.0 0.0 0.0 HOH
 5.561
 N
 O
ALA B:117 B:129 0.0 0.0 E -115.8 150.6 0.0 0.0 0.0 HOH
 5.513
 N
 O
4q9u 2 P20339 89.35 6e-115 X-RAY
 2014-07-23 ALA B:116 B:129 13.0 0.113 B -158.7 129.4 13.0 0.113 0.0
ALA F:116 F:129 3.0 0.026 E -143.0 135.4 3.0 0.026 0.0
1tu3 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 ALA A:116 A:129 0.0 0.0 E -101.7 150.6 0.0 0.0 0.0 HOH
 5.867
 N
 O
ALA B:116 B:129 0.0 0.0 E -122.3 143.2 0.0 0.0 0.0
ALA C:116 C:129 0.0 0.0 E -107.0 150.3 NA NA NA
ALA D:116 D:129 0.0 0.0 E -87.0 145.2 NA NA NA
ALA E:116 E:129 0.0 0.0 E -112.5 148.8 NA NA NA
1tu4 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 ALA A:116 A:129 0.0 0.0 E -111.1 140.9 0.0 0.0 0.0 HOH
 5.069
 N
 O
ALA B:116 B:129 0.0 0.0 E -108.3 148.5 NA NA NA
ALA C:116 C:129 0.0 0.0 E -114.7 143.7 NA NA NA
ALA D:116 D:129 0.0 0.0 E -115.3 148.4 NA NA NA
1n6h 1 P20339 89.35 7e-115 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -107.6 154.4 0.0 0.0 0.0 HOH
 5.436
 N
 O
1r2q 1 P20339 89.35 7e-115 X-RAY
 2003-12-23 ALA A:115 A:129 0.0 0.0 E -105.7 152.7 0.0 0.0 0.0 GOL
HOH
 7.400
5.426
 N
N
 C1
O
1n6o 1 P20339 88.76 4e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -108.2 152.3 0.0 0.0 0.0 HOH
 5.434
 N
 O
1n6r 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -111.2 153.1 0.0 0.0 0.0 HOH
 5.433
 N
 O
1n6p 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -108.7 152.0 0.0 0.0 0.0 HOH
 5.496
 N
 O
1n6i 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -107.0 154.0 0.0 0.0 0.0 HOH
 5.515
 N
 O
1n6k 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -105.9 153.2 0.0 0.0 0.0 HOH
 5.479
 N
 O
1n6l 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -113.1 154.8 0.0 0.0 0.0 HOH
 5.487
 N
 O
1n6n 1 P20339 88.76 8e-114 X-RAY
 2002-11-27 ALA A:115 A:129 0.0 0.0 E -108.7 156.2 0.0 0.0 0.0 HOH
 5.541
 N
 O
3mjh 1 P20339 89.29 1e-113 X-RAY
 2010-05-05 ALA A:114 A:129 0.0 0.0 E -106.2 144.5 0.0 0.0 0.0 HOH
 5.595
 N
 O
ALA C:114 C:129 0.0 0.0 E -102.6 148.5 NA NA NA
4kyi 2 P51148 92.17 2e-113 X-RAY
 2014-08-13 ALA B:118 B:130 0.0 0.0 E -114.1 152.9 0.0 0.0 0.0
ALA D:118 D:130 0.0 0.0 E -121.8 147.3 NA NA NA
ALA F:118 F:130 0.0 0.0 E -105.1 169.6 NA NA NA
ALA H:118 H:130 0.0 0.0 E -122.7 127.5 NA NA NA
1huq 1 P35278 92.68 2e-113 X-RAY
 2001-02-07 ALA A:112 A:130 0.0 0.0 E -104.3 151.5 0.0 0.0 0.0 HOH
 5.449
 N
 O
1z0d 1 P35278 92.12 2e-113 X-RAY
 2005-07-26 ALA A:114 A:130 0.0 0.0 E -110.5 140.5 0.0 0.0 0.0 HOH
 4.862
 N
 O
ALA B:114 C:130 0.0 0.0 E -113.4 142.8 NA NA NA
1z07 1 P35278 92.07 5e-112 X-RAY
 2005-07-26 ALA A:114 A:130 0.0 0.0 E -100.6 155.5 0.0 0.0 0.0 HOH
 5.530
 N
 O
7bl1 6 P20339 88.1 2e-111 EM
 2021-03-03 ALA F:114 DDD:129 0.0 0.0 E -105.0 143.6 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61020-f1 1 P61020 100.0 6e-164 ALA A:129 A:129 0.0 0.0 E -113.6 133.2
af-p51148-f1 1 P51148 86.12 8e-137 ALA A:130 A:130 0.0 0.0 E -113.0 135.6
af-p20339-f1 1 P20339 81.86 1e-135 ALA A:129 A:129 0.0 0.0 E -110.0 134.0