Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 56385153 . G A CCDS8900.1:NM_001252036.1:c.448Gca>Aca_NP_001238965.1:p.150A>T Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hei 1 P61020 100.0 7e-132 X-RAY
 2006-07-04 ALA A:138 A:150 48.0 0.417 H -56.4 -42.3 48.0 0.417 0.0 HOH
 3.428
 N
 O
ALA B:138 B:150 48.0 0.417 H -62.2 -43.8 48.0 0.417 0.0 HOH
 3.831
 CB
 O
4q9u 2 P20339 89.35 6e-115 X-RAY
 2014-07-23 SER B:137 B:150 63.0 0.548 H -66.9 -52.6 63.0 0.548 0.0
SER F:137 F:150 46.0 0.4 H -61.2 -46.6 46.0 0.4 0.0
1tu3 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 SER A:137 A:150 49.0 0.426 H -73.5 -48.3 49.0 0.426 0.0 HOH
 9.249
 N
 O
SER B:137 B:150 46.0 0.4 H -64.2 -53.2 46.0 0.4 0.0 HOH
 3.222
 OG
 O
SER C:137 C:150 51.0 0.443 H -61.1 -50.5 NA NA NA
SER D:137 D:150 35.0 0.304 H -52.8 -71.6 NA NA NA
SER E:137 E:150 56.0 0.487 H -75.5 -48.2 NA NA NA
1tu4 1 P20339 89.35 7e-115 X-RAY
 2004-10-05 SER A:137 A:150 59.0 0.513 H -62.8 -49.1 59.0 0.513 0.0 HOH
 2.785
 OG
 O
SER B:137 B:150 52.0 0.452 H -53.7 -48.8 NA NA NA
SER C:137 C:150 48.0 0.417 H -74.3 -45.2 NA NA NA
SER D:137 D:150 61.0 0.53 H -62.6 -57.6 NA NA NA
1n6h 1 P20339 89.35 7e-115 X-RAY
 2002-11-27 SER A:136 A:150 50.0 0.435 H -64.9 -43.2 50.0 0.435 0.0 HOH
 4.102
 CA
 O
1r2q 1 P20339 89.35 7e-115 X-RAY
 2003-12-23 SER A:136 A:150 58.0 0.504 H -64.9 -42.7 58.0 0.504 0.0 HOH
 3.946
 CA
 O
1n6o 1 P20339 88.76 4e-114 X-RAY
 2002-11-27 SER A:136 A:150 58.0 0.504 H -64.1 -46.0 58.0 0.504 0.0 HOH
 3.012
 OG
 O
1n6r 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 SER A:136 A:150 49.0 0.426 H -63.3 -44.0 49.0 0.426 0.0 HOH
 2.842
 OG
 O
1n6p 1 P20339 88.76 5e-114 X-RAY
 2002-11-27 SER A:136 A:150 59.0 0.513 H -64.7 -42.5 59.0 0.513 0.0 HOH
 5.310
 C
 O
1n6i 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 SER A:136 A:150 60.0 0.522 H -64.8 -43.4 60.0 0.522 0.0 HOH
 4.991
 O
 O
1n6k 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 SER A:136 A:150 58.0 0.504 H -63.8 -41.3 58.0 0.504 0.0 HOH
 3.998
 CA
 O
1n6l 1 P20339 88.76 7e-114 X-RAY
 2002-11-27 SER A:136 A:150 51.0 0.443 H -63.3 -42.9 51.0 0.443 0.0 HOH
 3.999
 CA
 O
1n6n 1 P20339 88.76 8e-114 X-RAY
 2002-11-27 SER A:136 A:150 62.0 0.539 H -63.7 -44.9 62.0 0.539 0.0 HOH
 4.081
 CA
 O
3mjh 1 P20339 89.29 1e-113 X-RAY
 2010-05-05 SER A:135 A:150 60.0 0.522 H -63.6 -41.1 60.0 0.522 0.0 HOH
 4.983
 O
 O
SER C:135 C:150 58.0 0.504 H -62.3 -38.4 NA NA NA
4kyi 2 P51148 92.17 2e-113 X-RAY
 2014-08-13 ALA B:139 B:151 36.0 0.313 H -71.2 -53.5 36.0 0.313 0.0
ALA D:139 D:151 46.0 0.4 H -66.7 -49.5 NA NA NA
ALA F:139 F:151 56.0 0.487 H -67.1 -46.6 NA NA NA
ALA H:139 H:151 50.0 0.435 H -63.8 -32.0 NA NA NA
1huq 1 P35278 92.68 2e-113 X-RAY
 2001-02-07 ALA A:133 A:151 45.0 0.391 H -62.5 -42.8 45.0 0.391 0.0 HOH
 3.898
 CB
 O
1z0d 1 P35278 92.12 2e-113 X-RAY
 2005-07-26 ALA A:135 A:151 45.0 0.391 H -66.3 -38.4 45.0 0.391 0.0 HOH
 3.702
 O
 O
ALA B:135 C:151 45.0 0.391 H -60.0 -47.5 NA NA NA
1z07 1 P35278 92.07 5e-112 X-RAY
 2005-07-26 ALA A:135 A:151 48.0 0.417 H -63.8 -44.1 48.0 0.417 0.0 HOH
 3.736
 O
 O
7bl1 6 P20339 88.1 2e-111 EM
 2021-03-03 SER F:135 DDD:150 59.0 0.513 H -62.5 -41.6 59.0 0.513 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61020-f1 1 P61020 100.0 6e-164 ALA A:150 A:150 47.0 0.409 H -59.0 -44.5
af-p51148-f1 1 P51148 86.12 8e-137 ALA A:151 A:151 48.0 0.417 H -59.2 -44.4
af-p20339-f1 1 P20339 81.86 1e-135 SER A:150 A:150 62.0 0.539 H -60.4 -43.3