Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 56385235 | . | T | A | CCDS8900.1:NM_001252036.1:c.530aTa>aAa_NP_001238965.1:p.177I>K | Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 2hei | 1 | P61020 | 100.0 | 7e-132 |
X-RAY |
2006-07-04 | ILE | A:165 | A:177 | 0.0 | 0.0 | H | -66.7 | -44.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.758 |
N |
O |
||
| ILE | B:165 | B:177 | 0.0 | 0.0 | H | -64.9 | -49.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.854 |
N |
O |
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| 4q9u | 2 | P20339 | 89.35 | 6e-115 |
X-RAY |
2014-07-23 | ILE | B:164 | B:177 | 28.0 | 0.16 | H | -48.3 | -55.8 | 28.0 | 0.16 | 0.0 | ||||||
| ILE | F:164 | F:177 | 4.0 | 0.023 | H | -72.5 | -31.4 | 4.0 | 0.023 | 0.0 | |||||||||||||
| 1tu3 | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2004-10-05 | ILE | A:164 | A:177 | 0.0 | 0.0 | H | -57.0 | -50.6 | 0.0 | 0.0 | 0.0 |
HOH |
7.361 |
O |
O |
||
| ILE | B:164 | B:177 | 0.0 | 0.0 | H | -62.2 | -45.1 | 0.0 | 0.0 | 0.0 |
HOH |
6.495 |
O |
O |
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| ILE | C:164 | C:177 | 0.0 | 0.0 | H | -71.8 | -45.6 | NA | NA | NA | |||||||||||||
| ILE | D:164 | D:177 | 3.0 | 0.017 | H | -80.0 | -38.4 | NA | NA | NA | |||||||||||||
| ILE | E:164 | E:177 | 0.0 | 0.0 | H | -49.7 | -57.1 | NA | NA | NA | |||||||||||||
| 1tu4 | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2004-10-05 | ILE | A:164 | A:177 | 0.0 | 0.0 | H | -61.7 | -53.6 | 0.0 | 0.0 | 0.0 |
HOH |
4.746 |
N |
O |
||
| ILE | B:164 | B:177 | 0.0 | 0.0 | H | -70.8 | -51.5 | NA | NA | NA | |||||||||||||
| ILE | C:164 | C:177 | 0.0 | 0.0 | H | -65.2 | -44.6 | NA | NA | NA | |||||||||||||
| ILE | D:164 | D:177 | 0.0 | 0.0 | H | -68.8 | -55.0 | NA | NA | NA | |||||||||||||
| 1n6h | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -65.6 | -48.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.705 |
N |
O |
||
| 1r2q | 1 | P20339 | 89.35 | 7e-115 |
X-RAY |
2003-12-23 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -63.3 | -48.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.806 |
N |
O |
||
| 1n6o | 1 | P20339 | 88.76 | 4e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -68.3 | -47.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.806 |
N |
O |
||
| 1n6r | 1 | P20339 | 88.76 | 5e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 1.0 | 0.006 | H | -66.3 | -48.7 | 1.0 | 0.006 | 0.0 |
HOH |
4.752 |
N |
O |
||
| 1n6p | 1 | P20339 | 88.76 | 5e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -67.1 | -45.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.780 |
N |
O |
||
| 1n6i | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -65.2 | -47.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.842 |
N |
O |
||
| 1n6k | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -66.3 | -50.3 | 0.0 | 0.0 | 0.0 |
HOH |
4.677 |
N |
O |
||
| 1n6l | 1 | P20339 | 88.76 | 7e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -65.3 | -47.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.808 |
N |
O |
||
| 1n6n | 1 | P20339 | 88.76 | 8e-114 |
X-RAY |
2002-11-27 | ILE | A:163 | A:177 | 0.0 | 0.0 | H | -66.6 | -47.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.836 |
N |
O |
||
| 3mjh | 1 | P20339 | 89.29 | 1e-113 |
X-RAY |
2010-05-05 | ILE | A:162 | A:177 | 0.0 | 0.0 | H | -60.4 | -52.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.267 |
N |
O |
||
| ILE | C:162 | C:177 | 0.0 | 0.0 | H | -62.1 | -46.7 | NA | NA | NA | |||||||||||||
| 4kyi | 2 | P51148 | 92.17 | 2e-113 |
X-RAY |
2014-08-13 | ILE | B:166 | B:178 | 0.0 | 0.0 | H | -74.0 | -40.6 | 0.0 | 0.0 | 0.0 | ||||||
| ILE | D:166 | D:178 | 0.0 | 0.0 | H | -87.4 | -29.3 | NA | NA | NA | |||||||||||||
| ILE | F:166 | F:178 | 0.0 | 0.0 | H | -78.7 | -40.9 | NA | NA | NA | |||||||||||||
| ILE | H:166 | H:178 | 0.0 | 0.0 | H | -77.2 | -34.8 | NA | NA | NA | |||||||||||||
| 1huq | 1 | P35278 | 92.68 | 2e-113 |
X-RAY |
2001-02-07 | ILE | A:160 | A:178 | 0.0 | 0.0 | H | -67.6 | -44.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.716 |
N |
O |
||
| 1z0d | 1 | P35278 | 92.12 | 2e-113 |
X-RAY |
2005-07-26 | ILE | A:162 | A:178 | 0.0 | 0.0 | H | -64.5 | -46.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.695 |
N |
O |
||
| ILE | B:162 | C:178 | 0.0 | 0.0 | H | -61.9 | -48.0 | NA | NA | NA | |||||||||||||
| 1z07 | 1 | P35278 | 92.07 | 5e-112 |
X-RAY |
2005-07-26 | ILE | A:162 | A:178 | 0.0 | 0.0 | H | -63.8 | -45.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.617 |
CG2 |
O |
||
| 7bl1 | 6 | P20339 | 88.1 | 2e-111 |
EM |
2021-03-03 | ILE | F:162 | DDD:177 | 0.0 | 0.0 | H | -59.9 | -53.8 | 0.0 | 0.0 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p61020-f1 | 1 | P61020 | 100.0 | 6e-164 | ILE | A:177 | A:177 | 0.0 | 0.0 | H | -62.6 | -49.6 | |
| af-p51148-f1 | 1 | P51148 | 86.12 | 8e-137 | ILE | A:178 | A:178 | 0.0 | 0.0 | H | -62.3 | -49.7 | |
| af-p20339-f1 | 1 | P20339 | 81.86 | 1e-135 | ILE | A:177 | A:177 | 0.0 | 0.0 | H | -62.1 | -50.3 | |