Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 6128464 | . | G | A | CCDS8539.1:NM_000552.3:c.4120Cgc>Tgc_NP_000543.2:p.1374R>C | Homo sapiens von Willebrand factor (VWF), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bv8 | 1 | P04275 | 99.11 | 3e-149 |
X-RAY |
2015-12-23 | ARG | A:149 | A:1374 | 11.0 | 0.049 | -124.9 | 71.1 | 11.0 | 0.049 | 0.0 |
HOH |
2.767 |
O |
O |
|||
7f49 | 1 | P04275 | 99.05 | 2e-140 |
X-RAY |
2021-07-07 | ARG | A:116 | A:611 | 15.0 | 0.067 | -125.7 | 65.5 | 15.0 | 0.067 | 0.0 |
HOH |
2.707 |
O |
O |
|||
1uex | 3 | P04275 | 99.52 | 3e-140 |
X-RAY |
2003-09-30 | ARG | C:115 | C:611 | 15.0 | 0.067 | -129.8 | 58.4 | 15.0 | 0.067 | 0.0 |
HOH |
4.287 |
CG |
O |
|||
3hxo | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | ARG | A:115 | A:611 | 8.0 | 0.036 | -137.0 | 72.7 | 8.0 | 0.036 | 0.0 |
HOH |
2.836 |
NE |
O |
|||
3hxq | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | ARG | A:115 | A:611 | 10.0 | 0.044 | -151.0 | 89.9 | 10.0 | 0.044 | 0.0 |
HOH |
6.890 |
NH2 |
O |
|||
7eow | 1 | P04275 | 100.0 | 7e-140 |
X-RAY |
2021-07-07 | ARG | A:138 | A:138 | 16.0 | 0.071 | -123.7 | 80.7 | 16.0 | 0.071 | 0.0 |
HOH |
2.500 |
O |
O |
|||
1auq | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
1998-10-14 | ARG | A:114 | A:611 | 10.0 | 0.044 | -136.3 | 71.7 | 10.0 | 0.044 | 0.0 |
HOH |
2.535 |
O |
O |
|||
1u0n | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
2005-04-19 | ARG | A:114 | A:611 | 18.0 | 0.08 | -118.3 | 56.7 | 17.0 | 0.076 | 0.004 |
D:P07359:0.004 |
||||||
1m10 | 1 | P04275 | 99.04 | 7e-139 |
X-RAY |
2002-08-28 | ARG | A:114 | A:611 | 37.0 | 0.164 | S | -95.0 | 87.0 | 23.0 | 0.102 | 0.062 |
B:P07359:0.062 |
|||||
7a6o | 1 | L8E853 | 99.51 | 5e-137 |
X-RAY |
2021-03-03 | ARG | A:113 | AAA:1374 | 12.0 | 0.053 | -123.6 | 73.5 | 12.0 | 0.053 | 0.0 |
HOH |
2.489 |
HB2 |
O |
|||
1ijb | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | ARG | A:112 | A:611 | 7.0 | 0.031 | -133.6 | 76.8 | 7.0 | 0.031 | 0.0 |
HOH |
2.622 |
O |
O |
|||
1ijk | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | ARG | A:112 | A:611 | 16.0 | 0.071 | -142.7 | 56.0 | 16.0 | 0.071 | 0.0 |
HOH |
5.456 |
N |
O |
|||
1sq0 | 1 | P04275 | 99.01 | 5e-134 |
X-RAY |
2004-04-13 | ARG | A:116 | A:611 | 57.0 | 0.253 | -157.8 | 66.7 | 37.0 | 0.164 | 0.089 |
B:P07359:0.089 |
HOH |
4.104 |
NH2 |
O |
||
4c2a | 1 | P04275 | 98.48 | 3e-130 |
X-RAY |
2014-01-08 | ARG | A:112 | A:1374 | 63.0 | 0.28 | -125.1 | 80.1 | 23.0 | 0.102 | 0.178 |
B:P07359:0.178 |
HOH |
2.529 |
NH1 |
O |
||
1oak | 3 | P04275 | 99.49 | 1e-128 |
X-RAY |
1998-10-21 | ARG | C:105 | A:611 | 12.0 | 0.053 | -127.6 | 70.6 | 12.0 | 0.053 | 0.0 |
HOH |
2.709 |
O |
O |
|||
1fns | 3 | P04275 | 98.97 | 2e-128 |
X-RAY |
2000-10-18 | ARG | C:105 | A:611 | 15.0 | 0.067 | -125.3 | 86.2 | 15.0 | 0.067 | 0.0 |
HOH |
2.908 |
O |
O |
|||
4c29 | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | ARG | A:112 | A:1374 | 9.0 | 0.04 | -131.2 | 73.5 | 9.0 | 0.04 | 0.0 |
HOH |
2.337 |
O |
O |
|||
ARG | B:112 | B:1374 | 11.0 | 0.049 | -129.9 | 74.4 | NA | NA | NA | ||||||||||||||
4c2b | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | ARG | A:112 | A:1374 | 17.0 | 0.076 | -127.7 | 82.8 | 16.0 | 0.071 | 0.005 |
B:P07359:0.004 |
HOH |
4.135 |
CG |
O |
||
ARG | C:112 | C:1374 | 15.0 | 0.067 | -123.9 | 83.3 | NA | NA | NA | ||||||||||||||
ARG | E:112 | E:1374 | 17.0 | 0.076 | -127.2 | 86.5 | NA | NA | NA | ||||||||||||||
ARG | G:112 | G:1374 | 16.0 | 0.071 | -127.3 | 86.3 | NA | NA | NA | ||||||||||||||
1u0o | 3 | Q8CIZ8 | 87.02 | 2e-119 |
X-RAY |
2005-04-19 | ARG | C:114 | C:611 | 11.0 | 0.049 | -121.8 | 66.0 | 11.0 | 0.049 | 0.0 |
HOH |
5.861 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04275-f1 | 1 | P04275 | 99.93 | 0.0 | ARG | A:1374 | A:1374 | 30.0 | 0.133 | -179.3 | 71.8 | ||
af-p04275-f2 | 1 | P04275 | 99.93 | 0.0 | ARG | A:1174 | A:1174 | 16.0 | 0.071 | -128.7 | 69.9 | ||
af-p04275-f3 | 1 | P04275 | 99.93 | 0.0 | ARG | A:974 | A:974 | 14.0 | 0.062 | -132.5 | 68.7 | ||
af-p04275-f6 | 1 | P04275 | 100.0 | 0.0 | ARG | A:374 | A:374 | 11.0 | 0.049 | -138.9 | 70.6 | ||
af-p04275-f5 | 1 | P04275 | 99.93 | 0.0 | ARG | A:574 | A:574 | 14.0 | 0.062 | -125.6 | 70.0 | ||
af-p04275-f7 | 1 | P04275 | 100.0 | 0.0 | ARG | A:174 | A:174 | 16.0 | 0.071 | -115.3 | 71.6 | ||
af-p04275-f4 | 1 | P04275 | 99.93 | 0.0 | ARG | A:774 | A:774 | 16.0 | 0.071 | -129.0 | 72.0 |