Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 6128487 | . | A | C | CCDS8539.1:NM_000552.3:c.4097tTc>tGc_NP_000543.2:p.1366F>C | Homo sapiens von Willebrand factor (VWF), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bv8 | 1 | P04275 | 99.11 | 3e-149 |
X-RAY |
2015-12-23 | PHE | A:141 | A:1366 | 120.0 | 0.571 | I | -107.4 | -8.2 | 120.0 | 0.571 | 0.0 |
HOH |
3.706 |
CD1 |
O |
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7f49 | 1 | P04275 | 99.05 | 2e-140 |
X-RAY |
2021-07-07 | PHE | A:108 | A:603 | 113.0 | 0.538 | I | -98.9 | -22.2 | 113.0 | 0.538 | 0.0 |
OMU A2M A2M OMG A2M OMC A2M OMC A2M HOH |
8.931 4.421 6.481 3.386 3.458 6.564 5.260 8.064 9.810 4.042 |
CZ CZ CE1 CE1 CD1 CB CE2 CE2 CZ CZ |
O4 C2 O4' N3 N9 N4 CM' OP2 N6 O |
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1uex | 3 | P04275 | 99.52 | 3e-140 |
X-RAY |
2003-09-30 | PHE | C:107 | C:603 | 90.0 | 0.429 | I | -91.5 | -11.6 | 90.0 | 0.429 | 0.0 |
HOH |
7.196 |
O |
O |
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3hxo | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | PHE | A:107 | A:603 | 102.0 | 0.486 | I | -90.6 | -35.9 | 102.0 | 0.486 | 0.0 |
DG DT DG DC HOH |
5.783 3.208 7.190 8.635 3.525 |
CZ CD1 CZ CZ O |
O3' N3 C5' OP1 O |
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3hxq | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | PHE | A:107 | A:603 | 97.0 | 0.462 | I | -101.1 | -23.3 | 97.0 | 0.462 | 0.0 |
DG DT DG DC HOH |
5.980 2.974 6.761 8.265 5.146 |
CE2 CD1 CZ CZ CB |
O3' N3 OP1 OP1 O |
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7eow | 1 | P04275 | 100.0 | 7e-140 |
X-RAY |
2021-07-07 | PHE | A:130 | A:130 | 120.0 | 0.571 | I | -100.2 | -14.4 | 120.0 | 0.571 | 0.0 |
HOH |
3.525 |
CE1 |
O |
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1auq | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
1998-10-14 | PHE | A:106 | A:603 | 108.0 | 0.514 | I | -95.0 | -16.3 | 108.0 | 0.514 | 0.0 |
HOH |
3.018 |
O |
O |
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1u0n | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
2005-04-19 | PHE | A:106 | A:603 | 113.0 | 0.538 | I | -86.2 | -26.3 | 48.0 | 0.229 | 0.309 |
D:P07359:0.31 |
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1m10 | 1 | P04275 | 99.04 | 7e-139 |
X-RAY |
2002-08-28 | PHE | A:106 | A:603 | 102.0 | 0.486 | I | -102.5 | -23.8 | 35.0 | 0.167 | 0.319 |
B:P07359:0.319 |
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7a6o | 1 | L8E853 | 99.51 | 5e-137 |
X-RAY |
2021-03-03 | PHE | A:105 | AAA:1366 | 111.0 | 0.529 | I | -94.8 | -27.2 | 111.0 | 0.529 | 0.0 |
HOH |
2.783 |
HD1 |
O |
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1ijb | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | PHE | A:104 | A:603 | 120.0 | 0.571 | I | -102.1 | -6.7 | 120.0 | 0.571 | 0.0 |
HOH |
3.777 |
CD1 |
O |
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1ijk | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | PHE | A:104 | A:603 | 116.0 | 0.552 | I | -87.3 | -3.1 | 116.0 | 0.552 | 0.0 |
HOH |
6.120 |
CE1 |
O |
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1sq0 | 1 | P04275 | 99.01 | 5e-134 |
X-RAY |
2004-04-13 | PHE | A:108 | A:603 | 111.0 | 0.529 | I | -85.1 | -40.2 | 44.0 | 0.21 | 0.319 |
B:P07359:0.319 |
HOH |
4.000 |
CE1 |
O |
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4c2a | 1 | P04275 | 98.48 | 3e-130 |
X-RAY |
2014-01-08 | PHE | A:104 | A:1366 | 113.0 | 0.538 | I | -92.6 | -28.4 | 43.0 | 0.205 | 0.333 |
B:P07359:0.333 |
PEG HOH |
8.907 3.809 |
O CD1 |
O1 O |
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1oak | 3 | P04275 | 99.49 | 1e-128 |
X-RAY |
1998-10-21 | PHE | C:97 | A:603 | 105.0 | 0.5 | I | -83.5 | -21.7 | 105.0 | 0.5 | 0.0 |
HOH |
3.637 |
CB |
O |
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1fns | 3 | P04275 | 98.97 | 2e-128 |
X-RAY |
2000-10-18 | PHE | C:97 | A:603 | 112.0 | 0.533 | I | -89.2 | -19.6 | 112.0 | 0.533 | 0.0 |
HOH |
2.841 |
O |
O |
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4c29 | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | PHE | A:104 | A:1366 | 81.0 | 0.386 | I | -94.8 | -9.2 | 81.0 | 0.386 | 0.0 |
HOH |
8.972 |
O |
O |
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PHE | B:104 | B:1366 | 86.0 | 0.41 | I | -95.7 | -7.7 | NA | NA | NA | |||||||||||||
4c2b | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | PHE | A:104 | A:1366 | 113.0 | 0.538 | I | -96.8 | -35.4 | 49.0 | 0.233 | 0.305 |
B:P07359:0.305 |
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PHE | C:104 | C:1366 | 108.0 | 0.514 | I | -93.6 | -37.9 | NA | NA | NA | |||||||||||||
PHE | E:104 | E:1366 | 106.0 | 0.505 | I | -108.3 | -22.8 | NA | NA | NA | |||||||||||||
PHE | G:104 | G:1366 | 112.0 | 0.533 | I | -93.1 | -26.3 | NA | NA | NA | |||||||||||||
1u0o | 3 | Q8CIZ8 | 87.02 | 2e-119 |
X-RAY |
2005-04-19 | PHE | C:106 | C:603 | 119.0 | 0.567 | H | -89.4 | -4.7 | 119.0 | 0.567 | 0.0 |
HOH |
9.301 |
C |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04275-f1 | 1 | P04275 | 99.93 | 0.0 | PHE | A:1366 | A:1366 | 64.0 | 0.305 | I | -92.1 | -12.4 | |
af-p04275-f2 | 1 | P04275 | 99.93 | 0.0 | PHE | A:1166 | A:1166 | 114.0 | 0.543 | I | -104.8 | -20.5 | |
af-p04275-f3 | 1 | P04275 | 99.93 | 0.0 | PHE | A:966 | A:966 | 41.0 | 0.195 | I | -107.6 | -22.8 | |
af-p04275-f6 | 1 | P04275 | 100.0 | 0.0 | PHE | A:366 | A:366 | 110.0 | 0.524 | I | -109.3 | -21.3 | |
af-p04275-f5 | 1 | P04275 | 99.93 | 0.0 | PHE | A:566 | A:566 | 116.0 | 0.552 | I | -106.5 | -19.5 | |
af-p04275-f7 | 1 | P04275 | 100.0 | 0.0 | PHE | A:166 | A:166 | 122.0 | 0.581 | I | -107.3 | -23.1 | |
af-p04275-f4 | 1 | P04275 | 99.93 | 0.0 | PHE | A:766 | A:766 | 36.0 | 0.171 | I | -104.8 | -19.8 |