Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 6128487 . A C CCDS8539.1:NM_000552.3:c.4097tTc>tGc_NP_000543.2:p.1366F>C Homo sapiens von Willebrand factor (VWF), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5bv8 1 P04275 99.11 3e-149 X-RAY
2015-12-23 PHE A:141 A:1366 120.0 0.571 I -107.4 -8.2 120.0 0.571 0.0 HOH
3.706
CD1
O
7f49 1 P04275 99.05 2e-140 X-RAY
2021-07-07 PHE A:108 A:603 113.0 0.538 I -98.9 -22.2 113.0 0.538 0.0 OMU
A2M
A2M
OMG
A2M
OMC
A2M
OMC
A2M
HOH
8.931
4.421
6.481
3.386
3.458
6.564
5.260
8.064
9.810
4.042
CZ
CZ
CE1
CE1
CD1
CB
CE2
CE2
CZ
CZ
O4
C2
O4'
N3
N9
N4
CM'
OP2
N6
O
1uex 3 P04275 99.52 3e-140 X-RAY
2003-09-30 PHE C:107 C:603 90.0 0.429 I -91.5 -11.6 90.0 0.429 0.0 HOH
7.196
O
O
3hxo 1 P04275 99.52 3e-140 X-RAY
2009-11-17 PHE A:107 A:603 102.0 0.486 I -90.6 -35.9 102.0 0.486 0.0 DG
DT
DG
DC
HOH
5.783
3.208
7.190
8.635
3.525
CZ
CD1
CZ
CZ
O
O3'
N3
C5'
OP1
O
3hxq 1 P04275 99.52 3e-140 X-RAY
2009-11-17 PHE A:107 A:603 97.0 0.462 I -101.1 -23.3 97.0 0.462 0.0 DG
DT
DG
DC
HOH
5.980
2.974
6.761
8.265
5.146
CE2
CD1
CZ
CZ
CB
O3'
N3
OP1
OP1
O
7eow 1 P04275 100.0 7e-140 X-RAY
2021-07-07 PHE A:130 A:130 120.0 0.571 I -100.2 -14.4 120.0 0.571 0.0 HOH
3.525
CE1
O
1auq 1 P04275 99.52 1e-139 X-RAY
1998-10-14 PHE A:106 A:603 108.0 0.514 I -95.0 -16.3 108.0 0.514 0.0 HOH
3.018
O
O
1u0n 1 P04275 99.52 1e-139 X-RAY
2005-04-19 PHE A:106 A:603 113.0 0.538 I -86.2 -26.3 48.0 0.229 0.309 D:P07359:0.31
1m10 1 P04275 99.04 7e-139 X-RAY
2002-08-28 PHE A:106 A:603 102.0 0.486 I -102.5 -23.8 35.0 0.167 0.319 B:P07359:0.319
7a6o 1 L8E853 99.51 5e-137 X-RAY
2021-03-03 PHE A:105 AAA:1366 111.0 0.529 I -94.8 -27.2 111.0 0.529 0.0 HOH
2.783
HD1
O
1ijb 1 P04275 99.01 4e-134 X-RAY
2002-07-10 PHE A:104 A:603 120.0 0.571 I -102.1 -6.7 120.0 0.571 0.0 HOH
3.777
CD1
O
1ijk 1 P04275 99.01 4e-134 X-RAY
2002-07-10 PHE A:104 A:603 116.0 0.552 I -87.3 -3.1 116.0 0.552 0.0 HOH
6.120
CE1
O
1sq0 1 P04275 99.01 5e-134 X-RAY
2004-04-13 PHE A:108 A:603 111.0 0.529 I -85.1 -40.2 44.0 0.21 0.319 B:P07359:0.319
HOH
4.000
CE1
O
4c2a 1 P04275 98.48 3e-130 X-RAY
2014-01-08 PHE A:104 A:1366 113.0 0.538 I -92.6 -28.4 43.0 0.205 0.333 B:P07359:0.333
PEG
HOH
8.907
3.809
O
CD1
O1
O
1oak 3 P04275 99.49 1e-128 X-RAY
1998-10-21 PHE C:97 A:603 105.0 0.5 I -83.5 -21.7 105.0 0.5 0.0 HOH
3.637
CB
O
1fns 3 P04275 98.97 2e-128 X-RAY
2000-10-18 PHE C:97 A:603 112.0 0.533 I -89.2 -19.6 112.0 0.533 0.0 HOH
2.841
O
O
4c29 1 P04275 98.48 4e-128 X-RAY
2014-01-08 PHE A:104 A:1366 81.0 0.386 I -94.8 -9.2 81.0 0.386 0.0 HOH
8.972
O
O
PHE B:104 B:1366 86.0 0.41 I -95.7 -7.7 NA NA NA
4c2b 1 P04275 98.48 4e-128 X-RAY
2014-01-08 PHE A:104 A:1366 113.0 0.538 I -96.8 -35.4 49.0 0.233 0.305 B:P07359:0.305
PHE C:104 C:1366 108.0 0.514 I -93.6 -37.9 NA NA NA
PHE E:104 E:1366 106.0 0.505 I -108.3 -22.8 NA NA NA
PHE G:104 G:1366 112.0 0.533 I -93.1 -26.3 NA NA NA
1u0o 3 Q8CIZ8 87.02 2e-119 X-RAY
2005-04-19 PHE C:106 C:603 119.0 0.567 H -89.4 -4.7 119.0 0.567 0.0 HOH
9.301
C
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04275-f1 1 P04275 99.93 0.0 PHE A:1366 A:1366 64.0 0.305 I -92.1 -12.4
af-p04275-f2 1 P04275 99.93 0.0 PHE A:1166 A:1166 114.0 0.543 I -104.8 -20.5
af-p04275-f3 1 P04275 99.93 0.0 PHE A:966 A:966 41.0 0.195 I -107.6 -22.8
af-p04275-f6 1 P04275 100.0 0.0 PHE A:366 A:366 110.0 0.524 I -109.3 -21.3
af-p04275-f5 1 P04275 99.93 0.0 PHE A:566 A:566 116.0 0.552 I -106.5 -19.5
af-p04275-f7 1 P04275 100.0 0.0 PHE A:166 A:166 122.0 0.581 I -107.3 -23.1
af-p04275-f4 1 P04275 99.93 0.0 PHE A:766 A:766 36.0 0.171 I -104.8 -19.8