Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 6128614 | . | C | A | CCDS8539.1:NM_000552.3:c.3970Ggc>Tgc_NP_000543.2:p.1324G>C | Homo sapiens von Willebrand factor (VWF), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bv8 | 1 | P04275 | 99.11 | 3e-149 |
X-RAY |
2015-12-23 | SER | A:99 | A:1324 | 56.0 | 0.487 | S | -138.0 | 171.0 | 56.0 | 0.487 | 0.0 |
HOH |
3.563 |
C |
O |
||
7f49 | 1 | P04275 | 99.05 | 2e-140 |
X-RAY |
2021-07-07 | GLY | A:66 | A:561 | 18.0 | 0.24 | S | -127.9 | 177.4 | 18.0 | 0.24 | 0.0 |
OMC HOH |
5.139 3.686 |
N CA |
N4 O |
||
1uex | 3 | P04275 | 99.52 | 3e-140 |
X-RAY |
2003-09-30 | GLY | C:65 | C:561 | 22.0 | 0.293 | S | -135.3 | -165.6 | 22.0 | 0.293 | 0.0 | ||||||
3hxo | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | GLY | A:65 | A:561 | 22.0 | 0.293 | S | -142.8 | 176.0 | 22.0 | 0.293 | 0.0 |
HOH |
3.838 |
C |
O |
||
3hxq | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | GLY | A:65 | A:561 | 27.0 | 0.36 | S | 117.4 | 157.1 | 27.0 | 0.36 | 0.0 |
HOH |
3.617 |
N |
O |
||
7eow | 1 | P04275 | 100.0 | 7e-140 |
X-RAY |
2021-07-07 | GLY | A:88 | A:88 | 26.0 | 0.347 | S | 120.9 | 170.0 | 26.0 | 0.347 | 0.0 |
HOH |
3.315 |
O |
O |
||
1auq | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
1998-10-14 | GLY | A:64 | A:561 | 33.0 | 0.44 | S | -126.2 | -159.0 | 33.0 | 0.44 | 0.0 |
CD HOH |
4.598 4.036 |
N CA |
CD O |
||
1u0n | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
2005-04-19 | GLY | A:64 | A:561 | 25.0 | 0.333 | S | -106.3 | -168.4 | 1.0 | 0.013 | 0.32 |
D:P07359:0.32 |
|||||
1m10 | 1 | P04275 | 99.04 | 7e-139 |
X-RAY |
2002-08-28 | GLY | A:64 | A:561 | 25.0 | 0.333 | S | 70.7 | 163.8 | 1.0 | 0.013 | 0.32 |
B:P07359:0.32 |
|||||
7a6o | 1 | L8E853 | 99.51 | 5e-137 |
X-RAY |
2021-03-03 | GLY | A:63 | AAA:1324 | 16.0 | 0.213 | S | -138.5 | 175.0 | 16.0 | 0.213 | 0.0 |
HOH |
9.001 |
O |
O |
||
1ijb | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | GLY | A:62 | A:561 | 25.0 | 0.333 | S | 125.9 | -174.5 | 25.0 | 0.333 | 0.0 |
HOH |
2.879 |
O |
O |
||
1ijk | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | GLY | A:62 | A:561 | 30.0 | 0.4 | S | -133.7 | -168.8 | 30.0 | 0.4 | 0.0 |
HOH |
2.885 |
O |
O |
||
1sq0 | 1 | P04275 | 99.01 | 5e-134 |
X-RAY |
2004-04-13 | GLY | A:66 | A:561 | 25.0 | 0.333 | S | -122.6 | -164.4 | 1.0 | 0.013 | 0.32 |
B:P07359:0.32 |
HOH |
2.839 |
N |
O |
|
4c2a | 1 | P04275 | 98.48 | 3e-130 |
X-RAY |
2014-01-08 | GLY | A:62 | A:1324 | 28.0 | 0.373 | S | -137.4 | -173.7 | 3.0 | 0.04 | 0.333 |
B:P07359:0.333 |
HOH |
2.854 |
N |
O |
|
1oak | 3 | P04275 | 99.49 | 1e-128 |
X-RAY |
1998-10-21 | GLY | C:55 | A:561 | 26.0 | 0.347 | S | -129.0 | -171.3 | 26.0 | 0.347 | 0.0 |
HOH |
3.647 |
C |
O |
||
1fns | 3 | P04275 | 98.97 | 2e-128 |
X-RAY |
2000-10-18 | GLY | C:55 | A:561 | 31.0 | 0.413 | S | 112.7 | 179.2 | 31.0 | 0.413 | 0.0 |
HOH |
3.090 |
O |
O |
||
4c29 | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | GLY | A:62 | A:1324 | 27.0 | 0.36 | S | -115.4 | -168.5 | 27.0 | 0.36 | 0.0 |
HOH |
3.006 |
O |
O |
||
GLY | B:62 | B:1324 | 30.0 | 0.4 | S | -115.7 | -167.3 | NA | NA | NA | |||||||||||||
4c2b | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | GLY | A:62 | A:1324 | 19.0 | 0.253 | S | -132.6 | -144.7 | 1.0 | 0.013 | 0.24 |
B:P07359:0.24 |
|||||
GLY | C:62 | C:1324 | 21.0 | 0.28 | S | -130.7 | -150.4 | NA | NA | NA | |||||||||||||
GLY | E:62 | E:1324 | 27.0 | 0.36 | S | -149.9 | 179.6 | NA | NA | NA | |||||||||||||
GLY | G:62 | G:1324 | 22.0 | 0.293 | S | -120.9 | -144.6 | NA | NA | NA | |||||||||||||
1u0o | 3 | Q8CIZ8 | 87.02 | 2e-119 |
X-RAY |
2005-04-19 | GLY | C:64 | C:561 | 22.0 | 0.293 | S | -131.3 | -176.9 | 22.0 | 0.293 | 0.0 |
HOH |
3.716 |
CA |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04275-f1 | 1 | P04275 | 99.93 | 0.0 | GLY | A:1324 | A:1324 | 31.0 | 0.413 | S | -122.5 | -172.3 | |
af-p04275-f2 | 1 | P04275 | 99.93 | 0.0 | GLY | A:1124 | A:1124 | 25.0 | 0.333 | S | -127.1 | -167.7 | |
af-p04275-f3 | 1 | P04275 | 99.93 | 0.0 | GLY | A:924 | A:924 | 25.0 | 0.333 | S | -131.3 | -169.0 | |
af-p04275-f6 | 1 | P04275 | 100.0 | 0.0 | GLY | A:324 | A:324 | 17.0 | 0.227 | S | -125.6 | -165.6 | |
af-p04275-f5 | 1 | P04275 | 99.93 | 0.0 | GLY | A:524 | A:524 | 7.0 | 0.093 | S | -129.8 | -165.5 | |
af-p04275-f7 | 1 | P04275 | 100.0 | 0.0 | GLY | A:124 | A:124 | 24.0 | 0.32 | S | -110.6 | -161.9 | |
af-p04275-f4 | 1 | P04275 | 99.93 | 0.0 | GLY | A:724 | A:724 | 24.0 | 0.32 | S | -129.6 | -167.4 |