Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 6128645 | . | C | A | CCDS8539.1:NM_000552.3:c.3939tgG>tgT_NP_000543.2:p.1313W>C | Homo sapiens von Willebrand factor (VWF), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bv8 | 1 | P04275 | 99.11 | 3e-149 |
X-RAY |
2015-12-23 | TRP | A:88 | A:1313 | 56.0 | 0.22 | S | -127.9 | -106.3 | 56.0 | 0.22 | 0.0 |
HOH |
2.911 |
NE1 |
O |
||
7f49 | 1 | P04275 | 99.05 | 2e-140 |
X-RAY |
2021-07-07 | TRP | A:55 | A:550 | 60.0 | 0.235 | S | -123.7 | -114.9 | 60.0 | 0.235 | 0.0 |
HOH |
3.999 |
CD1 |
O |
||
1uex | 3 | P04275 | 99.52 | 3e-140 |
X-RAY |
2003-09-30 | TRP | C:54 | C:550 | 65.0 | 0.255 | S | -128.3 | -83.7 | 65.0 | 0.255 | 0.0 | ||||||
3hxo | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | TRP | A:54 | A:550 | 47.0 | 0.184 | S | -123.5 | -106.4 | 47.0 | 0.184 | 0.0 |
HOH |
3.416 |
NE1 |
O |
||
3hxq | 1 | P04275 | 99.52 | 3e-140 |
X-RAY |
2009-11-17 | TRP | A:54 | A:550 | 61.0 | 0.239 | S | -147.8 | -101.7 | 61.0 | 0.239 | 0.0 |
HOH |
3.300 |
CZ2 |
O |
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7eow | 1 | P04275 | 100.0 | 7e-140 |
X-RAY |
2021-07-07 | TRP | A:77 | A:77 | 66.0 | 0.259 | S | -124.0 | -105.7 | 11.0 | 0.043 | 0.216 |
B:None:0.216 |
HOH |
2.913 |
NE1 |
O |
|
1auq | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
1998-10-14 | TRP | A:53 | A:550 | 57.0 | 0.224 | S | -126.4 | -104.9 | 57.0 | 0.224 | 0.0 |
HOH |
3.978 |
CZ2 |
O |
||
1u0n | 1 | P04275 | 99.52 | 1e-139 |
X-RAY |
2005-04-19 | TRP | A:53 | A:550 | 34.0 | 0.133 | S | -149.8 | -108.9 | 34.0 | 0.133 | 0.0 | ||||||
1m10 | 1 | P04275 | 99.04 | 7e-139 |
X-RAY |
2002-08-28 | TRP | A:53 | A:550 | 69.0 | 0.271 | T | -127.7 | -54.1 | 34.0 | 0.133 | 0.138 |
B:P07359:0.137 |
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7a6o | 1 | L8E853 | 99.51 | 5e-137 |
X-RAY |
2021-03-03 | TRP | A:52 | AAA:1313 | 61.0 | 0.239 | S | -115.1 | -108.1 | 27.0 | 0.106 | 0.133 |
B:None:0.133 |
HOH |
2.770 |
HD1 |
O |
|
1ijb | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | TRP | A:51 | A:550 | 57.0 | 0.224 | S | -129.3 | -105.7 | 57.0 | 0.224 | 0.0 |
HOH |
2.863 |
NE1 |
O |
||
1ijk | 1 | P04275 | 99.01 | 4e-134 |
X-RAY |
2002-07-10 | TRP | A:51 | A:550 | 69.0 | 0.271 | S | -82.4 | -104.5 | 69.0 | 0.271 | 0.0 |
HOH |
5.765 |
CH2 |
O |
||
1sq0 | 1 | P04275 | 99.01 | 5e-134 |
X-RAY |
2004-04-13 | TRP | A:55 | A:550 | 85.0 | 0.333 | T | -74.5 | -47.8 | 25.0 | 0.098 | 0.235 |
B:P07359:0.235 |
HOH |
5.030 |
N |
O |
|
4c2a | 1 | P04275 | 98.48 | 3e-130 |
X-RAY |
2014-01-08 | TRP | A:51 | A:1313 | 110.0 | 0.431 | S | -74.3 | -34.8 | 50.0 | 0.196 | 0.235 |
B:P07359:0.235 |
HOH |
2.803 |
O |
O |
|
1oak | 3 | P04275 | 99.49 | 1e-128 |
X-RAY |
1998-10-21 | TRP | C:44 | A:550 | 57.0 | 0.224 | S | -130.3 | -106.8 | 57.0 | 0.224 | 0.0 |
HOH |
5.664 |
CZ2 |
O |
||
1fns | 3 | P04275 | 98.97 | 2e-128 |
X-RAY |
2000-10-18 | TRP | C:44 | A:550 | 57.0 | 0.224 | S | -125.1 | -101.2 | 57.0 | 0.224 | 0.0 |
HOH |
3.353 |
CE2 |
O |
||
4c29 | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | TRP | A:51 | A:1313 | 55.0 | 0.216 | S | -130.4 | -94.7 | 55.0 | 0.216 | 0.0 |
HOH |
3.361 |
CB |
O |
||
TRP | B:51 | B:1313 | 52.0 | 0.204 | S | -128.5 | -96.1 | NA | NA | NA | |||||||||||||
4c2b | 1 | P04275 | 98.48 | 4e-128 |
X-RAY |
2014-01-08 | TRP | A:51 | A:1313 | 41.0 | 0.161 | S | -103.5 | -90.4 | 41.0 | 0.161 | 0.0 |
MES HOH |
7.198 6.477 |
NE1 NE1 |
O1 O |
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TRP | C:51 | C:1313 | 53.0 | 0.208 | S | -119.5 | -84.6 | NA | NA | NA | |||||||||||||
TRP | E:51 | E:1313 | 43.0 | 0.169 | S | -109.0 | -95.3 | NA | NA | NA | |||||||||||||
TRP | G:51 | G:1313 | 50.0 | 0.196 | S | -111.6 | -91.5 | NA | NA | NA | |||||||||||||
1u0o | 3 | Q8CIZ8 | 87.02 | 2e-119 |
X-RAY |
2005-04-19 | ARG | C:53 | C:550 | 73.0 | 0.324 | S | -109.6 | -99.1 | 73.0 | 0.324 | 0.0 |
HOH |
6.821 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04275-f1 | 1 | P04275 | 99.93 | 0.0 | TRP | A:1313 | A:1313 | 60.0 | 0.235 | S | -116.4 | -89.7 | |
af-p04275-f2 | 1 | P04275 | 99.93 | 0.0 | TRP | A:1113 | A:1113 | 55.0 | 0.216 | S | -109.9 | -87.7 | |
af-p04275-f3 | 1 | P04275 | 99.93 | 0.0 | TRP | A:913 | A:913 | 55.0 | 0.216 | S | -113.9 | -84.3 | |
af-p04275-f6 | 1 | P04275 | 100.0 | 0.0 | TRP | A:313 | A:313 | 37.0 | 0.145 | S | -112.3 | -84.6 | |
af-p04275-f5 | 1 | P04275 | 99.93 | 0.0 | TRP | A:513 | A:513 | 53.0 | 0.208 | S | -107.7 | -84.6 | |
af-p04275-f7 | 1 | P04275 | 100.0 | 0.0 | TRP | A:113 | A:113 | 49.0 | 0.192 | S | -100.0 | -101.4 | |
af-p04275-f4 | 1 | P04275 | 99.93 | 0.0 | TRP | A:713 | A:713 | 51.0 | 0.2 | S | -103.6 | -88.7 |