Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 6909613 . A C CCDS8562.1:NM_000616.4:c.190Aat>Cat_NP_000607.1:p.64N>H Homo sapiens CD4 molecule (CD4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7t0o 4 P01730 100.0 0.0 EM
 2022-01-12 ASN G:39 H:39 21.0 0.131 E -125.9 131.2 21.0 0.131 0.0
ASN I:39 L:39 33.0 0.206 E -133.4 131.4 29.0 0.181 0.025 A:None:0.025
ASN K:39 M:39 36.0 0.225 E -133.5 131.4 33.0 0.206 0.019 C:None:0.019
7t0r 3 P01730 99.73 0.0 X-RAY
 2022-01-12 ASN C:39 A:39 21.0 0.131 E -117.0 139.9 21.0 0.131 0.0
ASN F:39 D:39 34.0 0.212 E -121.5 138.9 NA NA NA
1wio 1 P01730 100.0 0.0 X-RAY
 1997-07-07 ASN A:39 A:39 12.0 0.075 E -131.8 172.4 12.0 0.075 0.0
ASN B:39 B:39 13.0 0.081 E -135.0 168.6 NA NA NA
1wip 1 P01730 100.0 0.0 X-RAY
 1997-07-07 ASN A:39 A:39 14.0 0.087 E -131.8 172.4 14.0 0.087 0.0
ASN B:39 B:39 12.0 0.075 E -135.0 168.6 NA NA NA
1wiq 1 P01730 100.0 0.0 X-RAY
 1997-07-07 ASN A:39 A:39 13.0 0.081 E -131.9 172.4 13.0 0.081 0.0
ASN B:39 B:39 13.0 0.081 E -135.0 168.6 NA NA NA
5u1f 5 P01730 100.0 0.0 EM
 2017-02-22 ASN I:39 M:1039 46.0 NA E -117.4 156.3 46.0 NA NA
6met 2 P01730 100.0 0.0 EM
 2018-12-12 ASN B:39 A:39 5.0 0.031 E -80.8 140.9 5.0 0.031 0.0
3t0e 5 P01730 99.45 0.0 X-RAY
 2012-03-07 ASN E:39 E:39 3.0 0.019 E -118.4 136.9 3.0 0.019 0.0
4q6i 3 P01730 100.0 1e-148 X-RAY
 2014-07-23 ASN C:64 C:39 8.0 0.05 E -97.2 117.5 NA NA NA
ASN I:64 I:39 8.0 0.05 E -97.5 116.3 NA NA NA
ASN J:64 J:39 8.0 0.05 E -96.7 116.7 NA NA NA
ASN K:64 K:39 9.0 0.056 E -97.0 117.1 9.0 0.056 0.0
1g9m 2 P01730 99.46 6e-129 X-RAY
 2000-12-27 ASN B:39 C:39 5.0 0.031 E -126.0 151.7 5.0 0.031 0.0 HOH
 3.216
 ND2
 O
1g9n 2 P01730 99.46 6e-129 X-RAY
 2000-12-27 ASN B:39 C:39 0.0 0.0 E -139.1 150.4 0.0 0.0 0.0 HOH
 4.885
 O
 O
1gc1 2 P01730 99.46 6e-129 X-RAY
 1998-07-08 ASN B:39 C:39 4.0 0.025 E -124.0 179.1 4.0 0.025 0.0 HOH
 2.624
 ND2
 O
1rzj 2 P01730 99.46 6e-129 X-RAY
 2004-02-03 ASN B:39 C:39 5.0 0.031 E -129.0 155.6 5.0 0.031 0.0 HOH
 3.643
 ND2
 O
1rzk 2 P01730 99.46 6e-129 X-RAY
 2004-02-03 ASN B:39 C:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0 HOH
 4.900
 O
 O
3j70 3 P01730 99.46 6e-129 EM
 2015-08-26 ASN C:39 C:39 2.0 0.013 E -121.6 149.8 2.0 0.013 0.0
ASN H:39 O:39 2.0 0.013 E -121.5 149.8 2.0 0.013 0.0
ASN M:39 T:39 2.0 0.013 E -121.6 149.8 2.0 0.013 0.0
4h8w 4 P01730 99.46 6e-129 X-RAY
 2014-04-09 ASN D:39 C:39 1.0 0.006 E -120.5 162.6 1.0 0.006 0.0 HOH
 2.612
 O
 O
4jm2 6 P01730 99.46 6e-129 X-RAY
 2013-05-29 ASN F:39 F:39 1.0 0.006 E -120.1 156.2 1.0 0.006 0.0
4rqs 1 P01730 99.46 6e-129 X-RAY
 2014-12-31 ASN A:39 B:39 1.0 0.006 E -139.8 144.3 1.0 0.006 0.0
5a8h 2 P01730 99.46 6e-129 EM
 2015-08-05 ASN B:39 B:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
ASN H:39 H:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
ASN N:39 N:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
5vn3 4 P01730 99.46 6e-129 EM
 2017-07-12 ASN D:39 C:39 0.0 0.0 E -73.2 148.0 0.0 0.0 0.0
ASN I:39 E:39 0.0 0.0 E -73.1 148.0 0.0 0.0 0.0
ASN N:39 F:39 0.0 0.0 E -73.1 148.0 0.0 0.0 0.0
6edu 3 P01730 99.46 6e-129 EM
 2018-10-17 ASN G:39 G:39 1.0 0.006 -79.3 142.5 1.0 0.006 0.0
ASN H:39 H:39 2.0 0.013 -79.2 142.6 2.0 0.013 0.0
ASN I:39 I:39 1.0 0.006 -79.3 142.5 1.0 0.006 0.0
2nxy 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 1.0 0.006 E -120.3 157.7 1.0 0.006 0.0 HOH
 3.005
 O
 O
2nxz 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 2.0 0.013 E -120.9 158.4 2.0 0.013 0.0 HOH
 3.026
 O
 O
2ny0 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 2.0 0.013 E -125.3 153.5 2.0 0.013 0.0 HOH
 3.255
 O
 O
2ny1 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 1.0 0.006 E -117.5 153.9 1.0 0.006 0.0 HOH
 2.840
 O
 O
2ny2 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 2.0 0.013 E -123.0 154.9 2.0 0.013 0.0 HOH
 3.178
 O
 O
2ny3 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 1.0 0.006 E -118.5 157.1 1.0 0.006 0.0 HOH
 3.098
 O
 O
2ny4 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 1.0 0.006 E -119.6 156.9 1.0 0.006 0.0 HOH
 2.940
 O
 O
2ny5 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 C:1039 2.0 0.013 E -121.7 162.8 2.0 0.013 0.0 HOH
 6.811
 C
 O
2ny6 2 P01730 100.0 7e-129 X-RAY
 2007-02-06 ASN B:40 B:1039 4.0 0.025 E -112.4 139.9 4.0 0.025 0.0
3jwd 2 P01730 100.0 7e-129 X-RAY
 2009-12-29 ASN B:40 C:1039 2.0 0.013 E -117.4 162.7 2.0 0.013 0.0 HOH
 3.020
 O
 O
ASN F:40 D:1039 1.0 0.006 E -127.2 160.4 NA NA NA
3jwo 2 P01730 100.0 7e-129 X-RAY
 2009-12-29 ASN B:40 C:1039 2.0 0.013 E -117.4 162.7 2.0 0.013 0.0
4r2g 2 P01730 100.0 7e-129 X-RAY
 2014-10-08 ASN B:40 F:39 0.0 0.0 E -128.4 130.4 0.0 0.0 0.0
ASN E:40 B:39 0.0 0.0 E -143.2 160.7 NA NA NA
ASN H:40 H:39 0.0 0.0 E -148.2 174.2 NA NA NA
ASN K:40 L:39 3.0 0.019 E -151.5 163.1 NA NA NA
5cay 2 P01730 100.0 7e-129 X-RAY
 2015-12-09 ASN B:40 B:39 13.0 0.081 E -113.5 155.0 13.0 0.081 0.0
3o2d 3 P01730 100.0 3e-128 X-RAY
 2010-12-22 ASN C:39 A:39 5.0 0.031 E -149.6 153.4 5.0 0.031 0.0
3cd4 1 P01730 100.0 3e-128 X-RAY
 1993-10-31 ASN A:39 A:39 11.0 0.069 E -109.3 131.3 11.0 0.069 0.0 HOH
 2.853
 OD1
 O
3lqa 1 P01730 100.0 4e-128 X-RAY
 2010-04-07 ASN A:39 C:39 0.0 0.0 E -140.0 160.0 0.0 0.0 0.0
5thr 3 P01730 100.0 4e-128 EM
 2016-11-16 ASN G:39 G:39 0.0 0.0 E -157.8 158.3 0.0 0.0 0.0
ASN H:39 H:39 0.0 0.0 E -157.8 158.3 0.0 0.0 0.0
ASN I:39 I:39 0.0 0.0 E -159.2 159.5 0.0 0.0 0.0
6cm3 3 P01730 100.0 4e-128 EM
 2018-10-17 ASN G:39 G:39 0.0 0.0 E -70.3 134.3 0.0 0.0 0.0
ASN H:39 H:39 0.0 0.0 E -70.3 134.3 0.0 0.0 0.0
ASN I:39 I:39 1.0 0.006 E -70.3 134.3 1.0 0.006 0.0
6u0l 2 P01730 100.0 4e-128 EM
 2019-12-11 ASN D:39 D:39 1.0 0.006 E -106.0 138.5 1.0 0.006 0.0
ASN E:39 E:39 1.0 0.006 E -106.0 138.5 1.0 0.006 0.0
ASN F:39 F:39 1.0 0.006 E -106.1 138.5 1.0 0.006 0.0
6u0n 2 P01730 100.0 4e-128 EM
 2019-12-11 ASN D:39 D:39 3.0 0.019 E -66.0 140.6 3.0 0.019 0.0
ASN E:39 E:39 1.0 0.006 E -82.6 138.9 1.0 0.006 0.0
ASN F:39 F:39 3.0 0.019 -63.0 144.6 3.0 0.019 0.0
2b4c 2 P01730 100.0 2e-127 X-RAY
 2005-11-15 ASN B:39 C:39 1.0 0.006 E -147.7 145.7 1.0 0.006 0.0
2qad 2 P01730 100.0 2e-127 X-RAY
 2007-09-25 ASN B:39 B:39 1.0 0.006 -156.1 105.9 1.0 0.006 0.0
ASN F:39 F:39 1.0 0.006 -156.2 106.9 NA NA NA
5a7x 2 P01730 100.0 2e-127 EM
 2015-08-05 ASN B:39 B:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
ASN F:39 F:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
ASN J:39 J:39 0.0 0.0 E -141.8 152.2 0.0 0.0 0.0
4p9h 1 P01730 99.45 3e-127 X-RAY
 2014-05-21 ASN A:39 C:39 1.0 0.006 E -132.5 142.9 1.0 0.006 0.0
6opn 3 P01730 98.37 8e-126 EM
 2020-10-21 ASN C:59 C:39 2.0 0.013 E -111.7 110.8 2.0 0.013 0.0
ASN F:59 F:39 1.0 0.006 E -111.6 110.8 1.0 0.006 0.0
ASN I:59 I:39 1.0 0.006 E -111.6 110.9 1.0 0.006 0.0
6opo 4 P01730 98.37 8e-126 EM
 2020-10-21 ASN D:59 C:39 8.0 0.05 E -106.1 111.7 8.0 0.05 0.0
ASN I:59 G:39 7.0 0.044 E -106.1 111.6 7.0 0.044 0.0
ASN N:59 N:39 7.0 0.044 E -106.1 111.7 7.0 0.044 0.0
6opp 4 P01730 98.37 8e-126 EM
 2020-10-21 ASN D:59 C:39 2.0 0.013 E -105.5 108.9 2.0 0.013 0.0
ASN M:59 M:39 0.0 0.0 E -121.0 178.2 0.0 0.0 0.0
ASN O:59 F:39 3.0 0.019 E -105.2 108.1 3.0 0.019 0.0
6opq 4 P01730 98.37 8e-126 EM
 2020-10-21 ASN D:59 C:39 1.0 0.006 E -109.7 131.4 1.0 0.006 0.0
ASN I:59 I:39 1.0 0.006 E -109.7 131.4 1.0 0.006 0.0
ASN N:59 J:39 1.0 0.006 E -109.7 131.4 1.0 0.006 0.0
6x5b 4 P01730 98.37 8e-126 EM
 2020-10-21 ASN D:59 C:39 0.0 0.0 E -123.1 176.0 0.0 0.0 0.0
ASN I:59 G:39 0.0 0.0 E -123.1 175.9 0.0 0.0 0.0
ASN N:59 N:39 0.0 0.0 E -123.1 175.9 0.0 0.0 0.0
6x5c 3 P01730 98.37 8e-126 EM
 2020-10-21 ASN C:59 C:39 0.0 0.0 E -112.9 174.6 0.0 0.0 0.0
ASN F:59 I:39 2.0 0.013 E -114.5 161.5 2.0 0.013 0.0
ASN I:59 J:39 1.0 0.006 E -116.9 161.6 1.0 0.006 0.0
1cdi 1 P01730 100.0 6e-125 X-RAY
 1994-04-30 ASN A:40 A:39 8.0 0.05 E -100.9 107.7 8.0 0.05 0.0
1cdh 1 P01730 100.0 7e-125 X-RAY
 1994-04-30 ASN A:39 A:39 10.0 0.062 -115.5 137.2 10.0 0.062 0.0 HOH
 4.980
 O
 O
1cdj 1 P01730 100.0 7e-125 X-RAY
 1997-04-01 ASN A:39 A:39 18.0 0.113 E -159.9 113.1 18.0 0.113 0.0 HOH
 4.748
 N
 O
1jl4 4 P01730 100.0 7e-125 X-RAY
 2001-09-19 ASN D:39 D:39 11.0 0.069 E -109.3 131.3 11.0 0.069 0.0
4r4h 2 P01730 100.0 7e-125 X-RAY
 2014-09-17 ASN B:39 B:39 1.0 0.006 E -154.2 163.0 1.0 0.006 0.0
6l1y 2 P01730 100.0 4e-124 X-RAY
 2020-05-20 ASN B:39 C:39 6.0 0.037 E -108.3 153.9 6.0 0.037 0.0 HOH
 6.804
 O
 O
1cdy 1 P01730 99.44 6e-124 X-RAY
 1997-04-01 ASN A:39 A:39 15.0 0.094 E -109.1 156.6 15.0 0.094 0.0 HOH
 3.178
 O
 O
1cdu 1 P01730 99.44 8e-124 X-RAY
 1997-04-01 ASN A:39 A:39 12.0 0.075 E -115.4 123.0 12.0 0.075 0.0 HOH
 6.512
 O
 O
6meo 2 P01730 100.0 2e-123 EM
 2018-12-12 ASN B:39 A:39 5.0 0.031 E -80.8 140.9 5.0 0.031 0.0
3jcb 4 P01730 100.0 7e-123 EM
 2017-05-10 ASN D:39 D:39 1.0 0.006 E -147.7 145.7 1.0 0.006 0.0
3jcc 4 P01730 100.0 7e-123 EM
 2017-05-10 ASN D:39 D:39 2.0 0.013 E -122.5 159.4 2.0 0.013 0.0
3s4s 4 P01730 98.88 9e-123 X-RAY
 2011-09-21 ASN D:43 G:39 1.0 0.006 E -118.4 154.6 1.0 0.006 0.0
ASN H:43 H:39 9.0 0.056 E -120.7 162.4 NA NA NA
3s5l 4 P01730 97.74 3e-119 X-RAY
 2011-09-21 ASN G:43 G:39 3.0 0.019 E -115.5 165.0 3.0 0.019 0.0 GOL
HOH
 3.652
2.874
 O
O
 O1
O
ASN H:43 H:39 1.0 0.006 E -115.2 167.7 NA NA NA
6tyb 2 F6XGD3 87.64 3e-101 X-RAY
 2019-10-02 ILE B:39 C:39 19.0 0.109 E -113.0 132.6 19.0 0.109 0.0 HOH
 2.673
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p01730-f1 1 P01730 100.0 0.0 ASN A:64 A:64 7.0 0.044 E -105.9 155.2