Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 79689925 . T A CCDS9017.1:NM_001135805.1:c.551gTg>gAg_NP_001129277.1:p.184V>E Homo sapiens synaptotagmin 1 (SYT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5w5c 6 P21707 100.0 0.0 X-RAY
 2017-08-23 VAL F:44 F:183 28.0 NA E -92.1 138.7 28.0 NA NA
5ccg 5 P21707 100.0 0.0 X-RAY
 2015-08-12 VAL E:43 E:183 0.0 0.0 E -120.7 134.4 0.0 0.0 0.0
VAL F:43 F:183 0.0 0.0 E -120.7 132.6 0.0 0.0 0.0
VAL K:43 K:183 0.0 0.0 E -121.3 134.9 NA NA NA
5cch 5 P21707 100.0 0.0 X-RAY
 2015-08-12 VAL E:43 E:183 0.0 0.0 E -132.4 126.6 0.0 0.0 0.0
VAL F:43 F:183 0.0 0.0 E -129.5 144.0 0.0 0.0 0.0
5cci 5 P21707 100.0 0.0 X-RAY
 2015-08-12 VAL E:43 E:183 0.0 0.0 E -123.1 134.0 0.0 0.0 0.0
VAL F:43 F:183 0.0 0.0 E -123.3 133.5 0.0 0.0 0.0
6mti 2 P21707 100.0 0.0 EM
 2019-04-24 VAL B:43 2:183 0.0 0.0 E -123.0 134.0 0.0 0.0 0.0
VAL C:43 3:183 0.0 0.0 E -123.1 134.1 0.0 0.0 0.0
VAL D:43 4:183 0.0 0.0 E -123.1 134.0 0.0 0.0 0.0
VAL E:43 5:183 0.0 0.0 E -123.0 134.0 0.0 0.0 0.0
2r83 1 P21579 99.65 0.0 X-RAY
 2008-02-12 VAL A:46 A:183 0.0 0.0 E -126.1 126.6 0.0 0.0 0.0 HOH
 7.162
 O
 O
VAL B:46 B:183 0.0 0.0 E -124.5 125.3 0.0 0.0 0.0 HOH
 7.222
 O
 O
5kj7 5 P21707 100.0 0.0 X-RAY
 2016-10-19 VAL E:43 E:183 0.0 0.0 E -118.4 138.1 0.0 0.0 0.0
VAL F:43 F:183 0.0 0.0 E -123.1 141.6 NA NA NA
VAL K:43 K:183 0.0 0.0 E -119.2 138.5 NA NA NA
5kj8 5 P21707 100.0 0.0 X-RAY
 2016-10-19 VAL E:43 E:183 0.0 0.0 E -120.4 135.7 0.0 0.0 0.0
VAL F:43 F:183 0.0 0.0 E -120.1 135.7 NA NA NA
VAL K:43 K:183 0.0 0.0 E -120.8 136.0 NA NA NA
2k8m 1 Q6AI31 100.0 2e-89 NMR
 2009-03-17 VAL A:44 A:44 4.0 0.026 E -85.1 132.0 4.0 0.026 0.0
VAL D:44 D:44 6.0 0.039 E -73.9 133.5 6.0 0.039 0.0
2ki6 1 P21579 100.0 2e-89 NMR
 2010-03-09 VAL A:44 A:44 4.0 0.026 E -68.5 118.4 4.0 0.026 0.0
VAL F:44 F:44 3.0 0.019 E -68.5 118.4 3.0 0.019 0.0
6mti 1 P21707 100.0 1e-88 EM
 2019-04-24 VAL A:43 1:183 0.0 0.0 E -123.0 134.0 0.0 0.0 0.0
VAL F:43 6:183 0.0 0.0 E -123.1 134.0 0.0 0.0 0.0
4wee 1 P21707 100.0 1e-88 X-RAY
 2014-10-01 VAL A:61 A:183 0.0 0.0 E -136.9 123.4 0.0 0.0 0.0 HOH
 3.813
 O
 O
5t0r 1 P46096 100.0 6e-88 X-RAY
 2017-06-14 VAL A:44 A:183 0.0 0.0 E -130.1 126.2 0.0 0.0 0.0 HOH
 5.664
 O
 O
5vfe 1 P46096 100.0 6e-88 X-RAY
 2018-04-11 VAL A:44 A:183 0.0 0.0 E -131.9 128.8 0.0 0.0 0.0 HOH
 5.523
 O
 O
VAL B:44 B:183 0.0 0.0 E -133.9 125.0 NA NA NA
3f00 1 P21579 100.0 7e-88 X-RAY
 2009-09-08 VAL A:61 A:183 0.0 0.0 E -136.8 129.5 0.0 0.0 0.0 HOH
 5.150
 O
 O
3f01 1 P21579 100.0 7e-88 X-RAY
 2009-10-06 VAL A:61 A:183 0.0 0.0 E -135.6 127.9 0.0 0.0 0.0 HOH
 3.714
 O
 O
3f04 1 P21579 100.0 7e-88 X-RAY
 2009-09-08 VAL A:61 A:183 0.0 0.0 E -133.8 126.3 0.0 0.0 0.0 HOH
 3.907
 O
 O
3f05 1 P21579 100.0 7e-88 X-RAY
 2009-10-06 VAL A:61 A:183 0.0 0.0 E -134.6 127.2 0.0 0.0 0.0 HOH
 3.821
 O
 O
1rsy 1 P21707 100.0 3e-87 X-RAY
 1995-05-08 VAL A:69 A:183 0.0 0.0 E -136.3 134.5 0.0 0.0 0.0 HOH
 5.027
 O
 O
6cxw 1 P21707 87.5 5e-71 X-RAY
 2019-04-17 ILE A:44 A:183 0.0 0.0 E -118.4 130.6 0.0 0.0 0.0 HOH
 5.382
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21579-f1 1 P21579 100.0 0.0 VAL A:184 A:184 0.0 0.0 E -123.8 125.6