Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 108939175 . T A CCDS9509.1:NM_006573.4:c.449aTt>aAt_NP_006564.1:p.150I>N Homo sapiens tumor necrosis factor superfamily member 13b (TNFSF13B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1osg 1 Q9Y275 100.0 1e-152 X-RAY
 2003-05-27 ILE A:73 A:150 51.0 0.291 E -118.1 153.0 51.0 0.291 0.0
ILE B:73 B:150 41.0 0.234 E -123.4 152.9 41.0 0.234 0.0 HOH
 3.369
 CG2
 O
ILE C:73 C:150 47.0 0.269 E -115.9 155.6 47.0 0.269 0.0
ILE D:73 D:150 44.0 0.251 E -131.7 138.5 NA NA NA
ILE E:73 E:150 43.0 0.246 E -136.2 155.2 NA NA NA
ILE F:73 F:150 52.0 0.297 E -125.6 150.0 NA NA NA
3v56 1 Q9Y275 100.0 1e-152 X-RAY
 2012-03-28 ILE A:73 A:150 52.0 0.297 E -126.1 144.7 52.0 0.297 0.0 HOH
 3.533
 CG2
 O
ILE B:73 B:150 47.0 0.269 E -127.1 145.4 47.0 0.269 0.0 HOH
 3.490
 CG2
 O
ILE C:73 C:150 45.0 0.257 E -126.0 144.9 45.0 0.257 0.0 HOH
 3.529
 CG2
 O
ILE D:73 D:150 48.0 0.274 E -127.4 145.1 NA NA NA
ILE E:73 E:150 46.0 0.263 E -125.1 146.4 NA NA NA
ILE F:73 F:150 48.0 0.274 E -126.1 146.0 NA NA NA
1kxg 1 Q9Y275 100.0 4e-111 X-RAY
 2002-03-20 ILE A:17 A:150 49.0 0.28 E -130.0 147.4 48.0 0.274 0.006 C:Q9Y275:0.006
 HOH
 3.745
 CG2
 O
ILE B:17 B:150 46.0 0.263 E -126.2 152.8 46.0 0.263 0.0 HOH
 3.677
 CG2
 O
ILE C:17 C:150 46.0 0.263 E -132.4 151.3 46.0 0.263 0.0 HOH
 3.441
 CG2
 O
ILE D:17 D:150 45.0 0.257 E -125.6 153.1 NA NA NA
ILE E:17 E:150 47.0 0.269 E -128.1 150.5 NA NA NA
ILE F:17 F:150 44.0 0.251 E -125.9 151.6 NA NA NA
5y9j 3 Q9Y275 100.0 4e-111 X-RAY
 2018-02-21 ILE C:17 A:150 49.0 0.28 E -126.2 150.3 49.0 0.28 0.0 HOH
 3.443
 CG2
 O
1kd7 1 Q9Y275 95.62 2e-110 X-RAY
 2002-11-12 ILE A:29 A:150 49.0 0.28 E -131.4 146.2 49.0 0.28 0.0
ILE B:29 B:150 48.0 0.274 E -131.7 145.8 48.0 0.274 0.0
ILE C:29 C:150 47.0 0.269 E -131.9 146.0 47.0 0.269 0.0
ILE D:29 K:150 47.0 0.269 E -131.0 147.3 NA NA NA
ILE E:29 L:150 48.0 0.274 E -131.6 145.5 NA NA NA
ILE F:29 M:150 48.0 0.274 E -131.0 147.5 NA NA NA
6fxn 1 Q9Y275 99.34 1e-109 X-RAY
 2018-04-04 ILE A:29 A:150 45.0 0.257 E -128.3 149.0 45.0 0.257 0.0 HOH
 3.867
 CG2
 O
ILE B:29 B:150 45.0 0.257 E -124.2 148.1 45.0 0.257 0.0 HOH
 3.788
 CG2
 O
ILE C:29 C:150 46.0 0.263 E -132.0 146.7 46.0 0.263 0.0 HOH
 5.025
 CG2
 O
ILE J:29 J:150 45.0 0.257 E -129.4 142.4 NA NA NA
ILE K:29 K:150 47.0 0.269 E -119.6 154.3 NA NA NA
ILE L:29 L:150 47.0 0.269 E -135.6 154.7 NA NA NA
4v46 1 Q9Y275 100.0 4e-108 X-RAY
 2014-07-09 ILE A:13 AA:150 41.0 0.234 E -131.8 152.4 7.0 0.04 0.194 KA:Q9Y275:0.194
ILE B:13 AB:150 41.0 0.234 E -131.9 152.9 7.0 0.04 0.194 LA:Q9Y275:0.194
ILE C:13 AC:150 40.0 0.229 E -130.7 152.1 7.0 0.04 0.189 MA:Q9Y275:0.189
ILE D:13 AD:150 42.0 0.24 E -130.6 152.7 6.0 0.034 0.206 NA:Q9Y275:0.206
ILE E:13 AE:150 42.0 0.24 E -131.7 151.1 7.0 0.04 0.2 OA:Q9Y275:0.2
ILE F:13 AF:150 41.0 0.234 E -132.4 151.4 8.0 0.046 0.188 PA:Q9Y275:0.189
ILE G:13 AG:150 41.0 0.234 E -130.8 152.5 7.0 0.04 0.194 E:Q9Y275:0.194
ILE H:13 AH:150 41.0 0.234 E -132.0 152.8 7.0 0.04 0.194 C:Q9Y275:0.194
ILE I:13 AI:150 40.0 0.229 E -132.0 153.4 7.0 0.04 0.189 B:Q9Y275:0.189
ILE J:13 AJ:150 41.0 0.234 E -130.0 152.0 7.0 0.04 0.194 F:Q9Y275:0.194
ILE K:13 AK:150 41.0 0.234 E -131.4 152.7 7.0 0.04 0.194 A:Q9Y275:0.194
ILE L:13 AL:150 41.0 0.234 E -130.3 152.8 5.0 0.029 0.205 D:Q9Y275:0.206
ILE M:13 AM:150 40.0 0.229 E -130.7 152.4 5.0 0.029 0.2 EA:Q9Y275:0.2
ILE N:13 AN:150 40.0 0.229 E -131.1 153.2 7.0 0.04 0.189 FA:Q9Y275:0.189
ILE O:13 AO:150 42.0 0.24 E -130.0 152.7 6.0 0.034 0.206 GA:Q9Y275:0.206
ILE P:13 AP:150 40.0 0.229 E -133.2 153.5 5.0 0.029 0.2 HA:Q9Y275:0.2
ILE Q:13 AQ:150 41.0 0.234 E -132.2 153.1 6.0 0.034 0.2 IA:Q9Y275:0.2
ILE R:13 AR:150 41.0 0.234 E -132.2 151.7 6.0 0.034 0.2 JA:Q9Y275:0.2
ILE S:13 AS:150 43.0 0.246 E -131.5 152.5 6.0 0.034 0.212 G:Q9Y275:0.211
ILE T:13 AT:150 42.0 0.24 E -131.8 151.6 6.0 0.034 0.206 H:Q9Y275:0.206
ILE U:13 AU:150 42.0 0.24 E -132.2 153.1 6.0 0.034 0.206 I:Q9Y275:0.206
ILE V:13 AV:150 40.0 0.229 E -131.6 153.5 4.0 0.023 0.206 J:Q9Y275:0.206
ILE W:13 AW:150 42.0 0.24 E -132.7 152.6 8.0 0.046 0.194 K:Q9Y275:0.194
ILE X:13 AX:150 42.0 0.24 E -130.4 153.2 7.0 0.04 0.2 L:Q9Y275:0.2
ILE Y:13 AY:150 40.0 0.229 E -130.6 152.5 6.0 0.034 0.195 SA:Q9Y275:0.194
ILE Z:13 AZ:150 40.0 0.229 E -132.1 152.3 7.0 0.04 0.189 UA:Q9Y275:0.189
ILE AA:13 A0:150 40.0 0.229 E -131.3 153.1 7.0 0.04 0.189 TA:Q9Y275:0.189
ILE BA:13 A1:150 40.0 0.229 E -130.0 151.5 8.0 0.046 0.183 QA:Q9Y275:0.183
ILE CA:13 A2:150 42.0 0.24 E -130.9 153.4 6.0 0.034 0.206 VA:Q9Y275:0.206
ILE DA:13 A3:150 41.0 0.234 E -131.5 152.9 8.0 0.046 0.188 RA:Q9Y275:0.189
ILE EA:13 A4:150 41.0 0.234 E -131.3 153.6 6.0 0.034 0.2 CB:Q9Y275:0.2
ILE FA:13 A5:150 42.0 0.24 E -131.7 152.1 7.0 0.04 0.2 DB:Q9Y275:0.2
ILE GA:13 A6:150 41.0 0.234 E -131.5 153.1 7.0 0.04 0.194 EB:Q9Y275:0.194
ILE HA:13 A7:150 41.0 0.234 E -131.4 152.1 6.0 0.034 0.2 FB:Q9Y275:0.2
ILE IA:13 A8:150 42.0 0.24 E -131.1 154.1 7.0 0.04 0.2 GB:Q9Y275:0.2
ILE JA:13 A9:150 41.0 0.234 E -132.1 152.3 6.0 0.034 0.2 HB:Q9Y275:0.2
ILE KA:13 Aa:150 41.0 0.234 E -130.3 151.5 7.0 0.04 0.194 BB:Q9Y275:0.194
ILE LA:13 Ab:150 41.0 0.234 E -131.0 151.7 6.0 0.034 0.2 ZA:Q9Y275:0.2
ILE MA:13 Ac:150 40.0 0.229 E -131.5 152.0 7.0 0.04 0.189 AB:Q9Y275:0.189
ILE NA:13 Ad:150 41.0 0.234 E -132.0 152.0 6.0 0.034 0.2 XA:Q9Y275:0.2
ILE OA:13 Ae:150 40.0 0.229 E -131.0 153.4 7.0 0.04 0.189 YA:Q9Y275:0.189
ILE PA:13 Af:150 41.0 0.234 E -131.9 151.9 7.0 0.04 0.194 WA:Q9Y275:0.194
ILE QA:13 Ag:150 40.0 0.229 E -131.2 152.0 6.0 0.034 0.195 M:Q9Y275:0.194
ILE RA:13 Ah:150 40.0 0.229 E -131.7 151.8 7.0 0.04 0.189 N:Q9Y275:0.189
ILE SA:13 Ai:150 41.0 0.234 E -131.0 153.1 7.0 0.04 0.194 O:Q9Y275:0.194
ILE TA:13 Aj:150 40.0 0.229 E -132.0 153.2 7.0 0.04 0.189 P:Q9Y275:0.189
ILE UA:13 Ak:150 40.0 0.229 E -132.1 152.9 7.0 0.04 0.189 Q:Q9Y275:0.189
ILE VA:13 Al:150 41.0 0.234 E -131.5 153.1 8.0 0.046 0.188 R:Q9Y275:0.189
ILE WA:13 Am:150 40.0 0.229 E -132.2 152.2 6.0 0.034 0.195 V:Q9Y275:0.194
ILE XA:13 An:150 41.0 0.234 E -131.4 152.8 6.0 0.034 0.2 X:Q9Y275:0.2
ILE YA:13 Ao:150 40.0 0.229 E -131.4 151.9 6.0 0.034 0.195 S:Q9Y275:0.194
ILE ZA:13 Ap:150 41.0 0.234 E -131.4 152.4 5.0 0.029 0.205 U:Q9Y275:0.206
ILE AB:13 Aq:150 42.0 0.24 E -130.7 152.2 6.0 0.034 0.206 T:Q9Y275:0.206
ILE BB:13 Ar:150 41.0 0.234 E -132.3 153.1 6.0 0.034 0.2 W:Q9Y275:0.2
ILE CB:13 As:150 42.0 0.24 E -131.1 153.2 6.0 0.034 0.206 BA:Q9Y275:0.206
ILE DB:13 At:150 41.0 0.234 E -130.7 152.6 6.0 0.034 0.2 DA:Q9Y275:0.2
ILE EB:13 Au:150 41.0 0.234 E -131.3 153.2 8.0 0.046 0.188 Y:Q9Y275:0.189
ILE FB:13 Av:150 40.0 0.229 E -132.2 151.7 6.0 0.034 0.195 AA:Q9Y275:0.194
ILE GB:13 Aw:150 41.0 0.234 E -132.7 153.7 7.0 0.04 0.194 Z:Q9Y275:0.194
ILE HB:13 Ax:150 40.0 0.229 E -131.4 152.9 7.0 0.04 0.189 CA:Q9Y275:0.189
1jh5 1 Q9Y275 100.0 5e-105 X-RAY
 2002-02-08 ILE A:9 A:9 48.0 0.274 E -129.2 144.5 14.0 0.08 0.194 G:Q9Y275:0.194
ILE B:9 B:9 49.0 0.28 E -130.0 145.0 14.0 0.08 0.2 A:Q9Y275:0.2
ILE C:9 C:9 48.0 0.274 E -129.5 144.1 13.0 0.074 0.2 F:Q9Y275:0.2
ILE D:9 D:9 48.0 0.274 E -129.4 144.4 13.0 0.074 0.2 B:Q9Y275:0.2
ILE E:9 E:9 47.0 0.269 E -129.1 144.8 13.0 0.074 0.195 H:Q9Y275:0.194
ILE F:9 F:9 48.0 0.274 E -129.9 145.0 13.0 0.074 0.2 J:Q9Y275:0.2
ILE G:9 G:9 48.0 0.274 E -129.4 144.6 12.0 0.069 0.205 I:Q9Y275:0.206
ILE H:9 H:9 49.0 0.28 E -129.1 144.7 14.0 0.08 0.2 C:Q9Y275:0.2
ILE I:9 I:9 48.0 0.274 E -130.0 145.2 13.0 0.074 0.2 D:Q9Y275:0.2
ILE J:9 J:9 49.0 0.28 E -130.0 144.5 13.0 0.074 0.206 E:Q9Y275:0.206
1oqd 1 Q9Y275 100.0 5e-105 X-RAY
 2003-05-13 ILE A:9 A:9 47.0 0.269 E -130.3 145.8 13.0 0.074 0.195 G:Q9Y275:0.194
ILE B:9 B:9 46.0 0.263 E -130.6 146.4 15.0 0.086 0.177 A:Q9Y275:0.011
A:Q9Y275:0.177
ILE C:9 C:9 46.0 0.263 E -131.5 145.7 12.0 0.069 0.194 F:Q9Y275:0.194
B:Q9Y275:0.006
ILE D:9 D:9 46.0 0.263 E -131.3 146.2 12.0 0.069 0.194 F:Q9Y275:0.006
B:Q9Y275:0.194
ILE E:9 E:9 46.0 0.263 E -130.8 146.0 15.0 0.086 0.177 D:Q9Y275:0.011
H:Q9Y275:0.177
ILE F:9 F:9 44.0 0.251 E -131.4 146.4 10.0 0.057 0.194 J:Q9Y275:0.194
E:Q9Y275:0.006
ILE G:9 G:9 45.0 0.257 E -130.1 145.4 10.0 0.057 0.2 I:Q9Y275:0.2
ILE H:9 H:9 46.0 0.263 E -131.1 146.0 11.0 0.063 0.2 C:Q9Y275:0.2
G:Q9Y275:0.006
ILE I:9 I:9 44.0 0.251 E -131.3 145.9 14.0 0.08 0.171 H:Q9Y275:0.006
D:Q9Y275:0.171
ILE J:9 J:9 46.0 0.263 E -130.9 145.8 10.0 0.057 0.206 E:Q9Y275:0.206
1oqe 1 Q9Y275 100.0 5e-105 X-RAY
 2003-05-13 ILE A:9 A:9 41.0 0.234 E -132.7 145.4 10.0 0.057 0.177 G:Q9Y275:0.177
ILE B:9 B:9 42.0 0.24 E -134.1 144.7 7.0 0.04 0.2 A:Q9Y275:0.011
A:Q9Y275:0.2
ILE C:9 C:9 43.0 0.246 E -133.9 144.2 10.0 0.057 0.189 F:Q9Y275:0.189
ILE D:9 D:9 44.0 0.251 E -133.8 144.6 11.0 0.063 0.188 B:Q9Y275:0.189
ILE E:9 E:9 42.0 0.24 E -133.6 143.9 13.0 0.074 0.166 D:Q9Y275:0.006
H:Q9Y275:0.166
ILE F:9 F:9 42.0 0.24 E -133.8 144.7 8.0 0.046 0.194 J:Q9Y275:0.194
E:Q9Y275:0.006
ILE G:9 G:9 41.0 0.234 E -133.4 144.4 8.0 0.046 0.188 I:Q9Y275:0.189
ILE H:9 H:9 43.0 0.246 E -133.0 144.5 11.0 0.063 0.183 C:Q9Y275:0.183
ILE I:9 I:9 41.0 0.234 E -133.3 144.5 11.0 0.063 0.171 H:Q9Y275:0.006
D:Q9Y275:0.166
ILE J:9 J:9 43.0 0.246 E -134.4 144.6 13.0 0.074 0.172 E:Q9Y275:0.171
4zch 1 O75888,Q9Y275 100.0 2e-102 X-RAY
 2015-05-13 ILE A:303 A:309 39.0 0.223 E -134.3 147.6 39.0 0.223 0.0 HOH
 3.661
 CG2
 O
ILE B:303 B:309 50.0 0.286 E -121.8 150.5 NA NA NA
4zch 1 O75888,Q9Y275 98.6 8e-99 X-RAY
 2015-05-13 ILE A:152 A:158 47.0 0.269 E -130.7 153.2 47.0 0.269 0.0 144
HOH
 3.780
3.912
 CD1
CG2
 C4
O
ILE B:152 B:158 41.0 0.234 E -123.4 151.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y275-f1 1 Q9Y275 100.0 0.0 ILE A:150 A:150 40.0 0.229 E -123.8 152.7