Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 108955826 . G A CCDS9509.1:NM_006573.4:c.619Gcc>Acc_NP_006564.1:p.207A>T Homo sapiens tumor necrosis factor superfamily member 13b (TNFSF13B), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1osg 1 Q9Y275 100.0 1e-152 X-RAY
2003-05-27 ALA A:130 A:207 6.0 0.052 E -152.5 139.1 0.0 0.0 0.052 G:None:0.035
B:Q9Y275:0.035
MG
MG
9.773
8.646
CA
CA
MG
MG
ALA B:130 B:207 3.0 0.026 E -148.6 135.2 0.0 0.0 0.026 C:Q9Y275:0.026
I:None:0.009
MG
9.897
CA
MG
ALA C:130 C:207 4.0 0.035 E -153.1 149.1 0.0 0.0 0.035 J:None:0.017
A:Q9Y275:0.017
MG
HOH
9.955
6.545
CA
O
MG
O
ALA D:130 D:207 4.0 0.035 E -137.2 157.3 NA NA NA
ALA E:130 E:207 8.0 0.07 E -143.2 139.3 NA NA NA
ALA F:130 F:207 7.0 0.061 E -141.7 144.8 NA NA NA
3v56 1 Q9Y275 100.0 1e-152 X-RAY
2012-03-28 ALA A:130 A:207 4.0 0.035 E -145.0 138.7 0.0 0.0 0.035 G:None:0.026
B:Q9Y275:0.026
SO4
8.310
CA
O3
ALA B:130 B:207 4.0 0.035 E -145.4 137.7 0.0 0.0 0.035 C:Q9Y275:0.026
H:None:0.026
SO4
8.466
CA
O2
ALA C:130 C:207 4.0 0.035 E -144.2 138.0 0.0 0.0 0.035 I:None:0.026
A:Q9Y275:0.026
SO4
8.264
CA
O4
ALA D:130 D:207 3.0 0.026 E -145.3 137.7 NA NA NA
ALA E:130 E:207 4.0 0.035 E -144.8 137.8 NA NA NA
ALA F:130 F:207 4.0 0.035 E -144.6 139.3 NA NA NA
1kxg 1 Q9Y275 100.0 4e-111 X-RAY
2002-03-20 ALA A:74 A:207 15.0 0.13 E -156.9 141.5 11.0 0.096 0.034 B:Q9Y275:0.035
MG
DIO
HOH
9.467
9.517
2.782
CA
N
O
MG
C2
O
ALA B:74 B:207 45.0 0.391 -28.2 134.2 39.0 0.339 0.052 C:Q9Y275:0.052
MG
DIO
DIO
HOH
9.502
9.610
5.744
5.461
CA
N
O
N
MG
O1
O1'
O
ALA C:74 C:207 16.0 0.139 E -157.0 133.8 13.0 0.113 0.026 A:Q9Y275:0.026
MG
DIO
HOH
9.480
5.534
5.784
CA
O
N
MG
C1'
O
ALA D:74 D:207 26.0 0.226 -42.0 136.4 NA NA NA
ALA E:74 E:207 24.0 0.209 -29.2 132.1 NA NA NA
ALA F:74 F:207 27.0 0.235 -28.6 133.8 NA NA NA
5y9j 3 Q9Y275 100.0 4e-111 X-RAY
2018-02-21 ALA C:74 A:207 5.0 0.043 E -146.3 142.2 2.0 0.017 0.026 B:None:0.026
HOH
5.402
N
O
1kd7 1 Q9Y275 95.62 2e-110 X-RAY
2002-11-12 ALA A:86 A:207 16.0 0.139 E -153.5 143.0 10.0 0.087 0.052 C:Q9Y275:0.052
ALA B:86 B:207 16.0 0.139 E -154.2 142.1 10.0 0.087 0.052 A:Q9Y275:0.052
ALA C:86 C:207 16.0 0.139 E -154.5 141.4 10.0 0.087 0.052 B:Q9Y275:0.052
ALA D:86 K:207 15.0 0.13 E -154.3 142.8 NA NA NA
ALA E:86 L:207 16.0 0.139 E -154.5 141.7 NA NA NA
ALA F:86 M:207 16.0 0.139 E -153.6 142.6 NA NA NA
6fxn 1 Q9Y275 99.34 1e-109 X-RAY
2018-04-04 ALA A:86 A:207 5.0 0.043 E -151.7 130.3 0.0 0.0 0.043 C:Q9Y275:0.026
D:None:0.026
HOH
5.735
N
O
ALA B:86 B:207 4.0 0.035 E -146.0 135.2 0.0 0.0 0.035 F:None:0.026
A:Q9Y275:0.017
HOH
5.649
N
O
ALA C:86 C:207 6.0 0.052 E -144.3 142.4 0.0 0.0 0.052 H:None:0.035
B:Q9Y275:0.035
HOH
6.330
O
O
ALA J:86 J:207 7.0 0.061 E -144.6 139.2 NA NA NA
ALA K:86 K:207 6.0 0.052 E -144.5 134.1 NA NA NA
ALA L:86 L:207 5.0 0.043 E -143.9 140.1 NA NA NA
4v46 1 Q9Y275 100.0 4e-108 X-RAY
2014-07-09 ALA A:70 AA:207 2.0 0.017 E -150.1 127.6 0.0 0.0 0.017 G:Q9Y275:0.017
IB:Q96RJ3:0.009
MG
9.576
CA
MG
ALA B:70 AB:207 3.0 0.026 E -148.8 126.7 0.0 0.0 0.026 H:Q9Y275:0.017
JB:Q96RJ3:0.009
MG
9.843
CA
MG
ALA C:70 AC:207 3.0 0.026 E -148.0 126.7 0.0 0.0 0.026 I:Q9Y275:0.017
KB:Q96RJ3:0.009
MG
MG
9.958
9.552
CA
CA
MG
MG
ALA D:70 AD:207 4.0 0.035 E -150.6 127.5 0.0 0.0 0.035 J:Q9Y275:0.026
LB:Q96RJ3:0.017
MG
9.799
CA
MG
ALA E:70 AE:207 4.0 0.035 E -149.4 126.3 0.0 0.0 0.035 K:Q9Y275:0.026
MB:Q96RJ3:0.017
MG
9.672
CA
MG
ALA F:70 AF:207 2.0 0.017 E -149.5 127.1 0.0 0.0 0.017 NB:Q96RJ3:0.009
L:Q9Y275:0.017
MG
9.672
CA
MG
ALA G:70 AG:207 3.0 0.026 E -149.1 128.4 0.0 0.0 0.026 OB:Q96RJ3:0.009
M:Q9Y275:0.017
MG
9.588
CA
MG
ALA H:70 AH:207 3.0 0.026 E -149.3 127.3 0.0 0.0 0.026 PB:Q96RJ3:0.009
N:Q9Y275:0.017
MG
9.622
CA
MG
ALA I:70 AI:207 3.0 0.026 E -148.9 127.8 0.0 0.0 0.026 O:Q9Y275:0.017
QB:Q96RJ3:0.017
MG
9.738
CA
MG
ALA J:70 AJ:207 3.0 0.026 E -150.9 127.3 0.0 0.0 0.026 RB:Q96RJ3:0.017
P:Q9Y275:0.017
MG
9.506
CA
MG
ALA K:70 AK:207 3.0 0.026 E -149.9 126.8 0.0 0.0 0.026 Q:Q9Y275:0.026
SB:Q96RJ3:0.009
MG
9.776
CA
MG
ALA L:70 AL:207 3.0 0.026 E -150.6 127.1 0.0 0.0 0.026 R:Q9Y275:0.017
TB:Q96RJ3:0.017
MG
9.816
CA
MG
ALA M:70 AM:207 3.0 0.026 E -148.9 127.7 0.0 0.0 0.026 A:Q9Y275:0.017
UB:Q96RJ3:0.017
MG
9.696
CA
MG
ALA N:70 AN:207 4.0 0.035 E -152.1 127.1 0.0 0.0 0.035 VB:Q96RJ3:0.017
B:Q9Y275:0.026
MG
MG
9.957
9.392
CA
CA
MG
MG
ALA O:70 AO:207 4.0 0.035 E -149.4 127.2 0.0 0.0 0.035 WB:Q96RJ3:0.017
C:Q9Y275:0.026
MG
MG
9.996
9.532
CA
CA
MG
MG
ALA P:70 AP:207 3.0 0.026 E -151.0 127.9 0.0 0.0 0.026 XB:Q96RJ3:0.009
D:Q9Y275:0.026
MG
MG
9.944
9.512
CA
CA
MG
MG
ALA Q:70 AQ:207 3.0 0.026 E -150.6 127.9 0.0 0.0 0.026 YB:Q96RJ3:0.017
E:Q9Y275:0.017
MG
MG
9.865
9.441
CA
CA
MG
MG
ALA R:70 AR:207 3.0 0.026 E -150.1 126.6 0.0 0.0 0.026 F:Q9Y275:0.017
ZB:Q96RJ3:0.017
MG
MG
9.914
9.377
CA
CA
MG
MG
ALA S:70 AS:207 4.0 0.035 E -149.6 126.1 0.0 0.0 0.035 AC:Q96RJ3:0.017
Y:Q9Y275:0.026
MG
MG
9.963
9.542
CA
CA
MG
MG
ALA T:70 AT:207 3.0 0.026 E -149.0 127.8 0.0 0.0 0.026 Z:Q9Y275:0.017
BC:Q96RJ3:0.017
MG
9.769
CA
MG
ALA U:70 AU:207 3.0 0.026 E -149.9 128.1 0.0 0.0 0.026 CC:Q96RJ3:0.017
AA:Q9Y275:0.017
MG
9.645
CA
MG
ALA V:70 AV:207 3.0 0.026 E -151.3 127.1 0.0 0.0 0.026 BA:Q9Y275:0.017
DC:Q96RJ3:0.017
MG
9.567
CA
MG
ALA W:70 AW:207 2.0 0.017 E -151.5 126.4 0.0 0.0 0.017 CA:Q9Y275:0.009
EC:Q96RJ3:0.009
MG
MG
9.985
9.535
CA
CA
MG
MG
ALA X:70 AX:207 3.0 0.026 E -149.4 128.0 0.0 0.0 0.026 FC:Q96RJ3:0.017
DA:Q9Y275:0.017
MG
9.736
CA
MG
ALA Y:70 AY:207 2.0 0.017 E -149.0 127.4 0.0 0.0 0.017 EA:Q9Y275:0.009
GC:Q96RJ3:0.009
MG
9.844
CA
MG
ALA Z:70 AZ:207 4.0 0.035 E -150.4 125.8 0.0 0.0 0.035 HC:Q96RJ3:0.017
FA:Q9Y275:0.017
MG
MG
9.973
9.649
CA
CA
MG
MG
ALA AA:70 A0:207 4.0 0.035 E -150.3 127.5 0.0 0.0 0.035 IC:Q96RJ3:0.017
GA:Q9Y275:0.017
MG
9.758
CA
MG
ALA BA:70 A1:207 3.0 0.026 E -149.7 126.5 0.0 0.0 0.026 HA:Q9Y275:0.017
JC:Q96RJ3:0.017
MG
9.722
CA
MG
ALA CA:70 A2:207 3.0 0.026 E -149.5 127.6 0.0 0.0 0.026 KC:Q96RJ3:0.009
IA:Q9Y275:0.017
MG
9.969
CA
MG
ALA DA:70 A3:207 3.0 0.026 E -150.9 127.6 0.0 0.0 0.026 LC:Q96RJ3:0.009
JA:Q9Y275:0.017
MG
9.815
CA
MG
ALA EA:70 A4:207 3.0 0.026 E -149.3 126.7 0.0 0.0 0.026 MC:Q96RJ3:0.017
S:Q9Y275:0.017
MG
MG
9.979
9.499
CA
CA
MG
MG
ALA FA:70 A5:207 3.0 0.026 E -150.8 128.4 0.0 0.0 0.026 T:Q9Y275:0.017
NC:Q96RJ3:0.017
MG
MG
9.984
9.370
CA
CA
MG
MG
ALA GA:70 A6:207 4.0 0.035 E -148.9 127.3 0.0 0.0 0.035 U:Q9Y275:0.026
OC:Q96RJ3:0.017
MG
MG
9.912
9.443
CA
CA
MG
MG
ALA HA:70 A7:207 4.0 0.035 E -150.7 127.7 0.0 0.0 0.035 V:Q9Y275:0.026
PC:Q96RJ3:0.017
MG
MG
9.907
9.445
CA
CA
MG
MG
ALA IA:70 A8:207 4.0 0.035 E -150.2 128.4 0.0 0.0 0.035 QC:Q96RJ3:0.017
W:Q9Y275:0.026
MG
MG
9.867
9.347
CA
CA
MG
MG
ALA JA:70 A9:207 4.0 0.035 E -150.0 126.8 0.0 0.0 0.035 RC:Q96RJ3:0.017
X:Q9Y275:0.026
MG
MG
9.776
9.287
CA
CA
MG
MG
ALA KA:70 Aa:207 3.0 0.026 E -148.9 127.5 0.0 0.0 0.026 SC:Q96RJ3:0.009
QA:Q9Y275:0.017
MG
MG
9.961
9.520
CA
CA
MG
MG
ALA LA:70 Ab:207 4.0 0.035 E -150.9 128.2 0.0 0.0 0.035 RA:Q9Y275:0.017
TC:Q96RJ3:0.017
MG
9.782
CA
MG
ALA MA:70 Ac:207 3.0 0.026 E -151.1 126.5 0.0 0.0 0.026 SA:Q9Y275:0.017
UC:Q96RJ3:0.017
MG
9.483
CA
MG
ALA NA:70 Ad:207 4.0 0.035 E -150.0 127.5 0.0 0.0 0.035 VC:Q96RJ3:0.017
TA:Q9Y275:0.026
MG
MG
9.897
9.564
CA
CA
MG
MG
ALA OA:70 Ae:207 3.0 0.026 E -148.9 128.1 0.0 0.0 0.026 WC:Q96RJ3:0.009
UA:Q9Y275:0.017
MG
9.859
CA
MG
ALA PA:70 Af:207 4.0 0.035 E -147.8 127.5 0.0 0.0 0.035 VA:Q9Y275:0.026
XC:Q96RJ3:0.017
MG
9.779
CA
MG
ALA QA:70 Ag:207 4.0 0.035 E -150.2 127.1 0.0 0.0 0.035 YC:Q96RJ3:0.017
WA:Q9Y275:0.026
MG
9.788
CA
MG
ALA RA:70 Ah:207 3.0 0.026 E -150.4 126.8 0.0 0.0 0.026 ZC:Q96RJ3:0.017
XA:Q9Y275:0.017
MG
9.671
CA
MG
ALA SA:70 Ai:207 4.0 0.035 E -148.3 126.6 0.0 0.0 0.035 YA:Q9Y275:0.026
AD:Q96RJ3:0.017
MG
9.985
CA
MG
ALA TA:70 Aj:207 3.0 0.026 E -150.6 128.4 0.0 0.0 0.026 BD:Q96RJ3:0.017
ZA:Q9Y275:0.017
MG
9.746
CA
MG
ALA UA:70 Ak:207 4.0 0.035 E -149.7 128.2 0.0 0.0 0.035 CD:Q96RJ3:0.017
AB:Q9Y275:0.017
MG
9.657
CA
MG
ALA VA:70 Al:207 4.0 0.035 E -149.0 126.6 0.0 0.0 0.035 DD:Q96RJ3:0.017
BB:Q9Y275:0.026
MG
9.851
CA
MG
ALA WA:70 Am:207 3.0 0.026 E -150.7 127.7 0.0 0.0 0.026 KA:Q9Y275:0.017
ED:Q96RJ3:0.009
MG
MG
9.956
9.505
CA
CA
MG
MG
ALA XA:70 An:207 3.0 0.026 E -150.3 128.1 0.0 0.0 0.026 LA:Q9Y275:0.017
FD:Q96RJ3:0.017
MG
MG
9.914
9.344
CA
CA
MG
MG
ALA YA:70 Ao:207 3.0 0.026 E -149.7 127.0 0.0 0.0 0.026 GD:Q96RJ3:0.017
MA:Q9Y275:0.017
MG
MG
9.800
9.349
CA
CA
MG
MG
ALA ZA:70 Ap:207 4.0 0.035 E -151.7 126.5 0.0 0.0 0.035 NA:Q9Y275:0.026
HD:Q96RJ3:0.017
MG
MG
9.992
9.476
CA
CA
MG
MG
ALA AB:70 Aq:207 4.0 0.035 E -149.9 127.0 0.0 0.0 0.035 OA:Q9Y275:0.026
ID:Q96RJ3:0.017
MG
MG
9.936
9.391
CA
CA
MG
MG
ALA BB:70 Ar:207 3.0 0.026 E -149.2 126.8 0.0 0.0 0.026 JD:Q96RJ3:0.017
PA:Q9Y275:0.017
MG
MG
9.819
9.242
CA
CA
MG
MG
ALA CB:70 As:207 3.0 0.026 E -150.7 127.4 0.0 0.0 0.026 EB:Q9Y275:0.017
KD:Q96RJ3:0.017
MG
9.693
CA
MG
ALA DB:70 At:207 3.0 0.026 E -150.3 126.6 0.0 0.0 0.026 GB:Q9Y275:0.017
LD:Q96RJ3:0.017
MG
9.814
CA
MG
ALA EB:70 Au:207 4.0 0.035 E -150.6 127.0 0.0 0.0 0.035 MD:Q96RJ3:0.026
FB:Q9Y275:0.017
MG
9.644
CA
MG
ALA FB:70 Av:207 3.0 0.026 E -149.6 127.5 0.0 0.0 0.026 CB:Q9Y275:0.026
ND:Q96RJ3:0.009
MG
9.461
CA
MG
ALA GB:70 Aw:207 4.0 0.035 E -149.7 126.3 0.0 0.0 0.035 HB:Q9Y275:0.026
OD:Q96RJ3:0.026
MG
MG
9.969
9.483
CA
CA
MG
MG
ALA HB:70 Ax:207 4.0 0.035 E -150.8 127.0 0.0 0.0 0.035 PD:Q96RJ3:0.017
DB:Q9Y275:0.026
MG
MG
9.937
9.467
CA
CA
MG
MG
1jh5 1 Q9Y275 100.0 5e-105 X-RAY
2002-02-08 ALA A:66 A:66 24.0 0.209 E -162.0 117.5 20.0 0.174 0.035 B:Q9Y275:0.035
ALA B:66 B:66 24.0 0.209 E -162.1 118.1 21.0 0.183 0.026 C:Q9Y275:0.026
ALA C:66 C:66 24.0 0.209 E -162.1 117.7 21.0 0.183 0.026 A:Q9Y275:0.026
ALA D:66 D:66 24.0 0.209 E -162.9 117.8 21.0 0.183 0.026 E:Q9Y275:0.026
ALA E:66 E:66 24.0 0.209 E -161.5 118.3 20.0 0.174 0.035 F:Q9Y275:0.035
ALA F:66 F:66 24.0 0.209 E -162.3 118.5 20.0 0.174 0.035 D:Q9Y275:0.035
ALA G:66 G:66 25.0 0.217 E -162.4 117.9 21.0 0.183 0.034 H:Q9Y275:0.035
ALA H:66 H:66 25.0 0.217 E -162.8 117.8 21.0 0.183 0.034 I:Q9Y275:0.035
ALA I:66 I:66 26.0 0.226 E -162.2 118.5 21.0 0.183 0.043 G:Q9Y275:0.043
ALA J:66 J:66 23.0 0.2 E -162.7 118.1 20.0 0.174 0.026 J:Q9Y275:0.026
1oqd 1 Q9Y275 100.0 5e-105 X-RAY
2003-05-13 ALA A:66 A:66 8.0 0.07 E -152.5 121.8 0.0 0.0 0.07 K:Q02223:0.061
B:Q9Y275:0.035
ALA B:66 B:66 8.0 0.07 E -153.6 121.7 0.0 0.0 0.07 C:Q9Y275:0.035
L:Q02223:0.052
ALA C:66 C:66 7.0 0.061 E -153.4 121.6 0.0 0.0 0.061 A:Q9Y275:0.035
M:Q02223:0.052
ALA D:66 D:66 25.0 0.217 E -153.7 122.9 21.0 0.183 0.034 E:Q9Y275:0.035
ALA E:66 E:66 6.0 0.052 E -153.1 122.2 0.0 0.0 0.052 F:Q9Y275:0.035
N:Q02223:0.043
ALA F:66 F:66 7.0 0.061 E -153.4 122.5 0.0 0.0 0.061 D:Q9Y275:0.035
O:Q02223:0.052
ALA G:66 G:66 8.0 0.07 E -154.2 121.4 0.0 0.0 0.07 H:Q9Y275:0.026
P:Q02223:0.061
ALA H:66 H:66 24.0 0.209 E -154.2 122.1 20.0 0.174 0.035 I:Q9Y275:0.035
ALA I:66 I:66 7.0 0.061 E -153.1 122.1 0.0 0.0 0.061 G:Q9Y275:0.035
Q:Q02223:0.052
ALA J:66 J:66 7.0 0.061 E -154.2 122.2 0.0 0.0 0.061 R:Q02223:0.052
J:Q9Y275:0.026
1oqe 1 Q9Y275 100.0 5e-105 X-RAY
2003-05-13 ALA A:66 A:66 6.0 0.052 E -151.3 124.1 0.0 0.0 0.052 K:Q96RJ3:0.035
B:Q9Y275:0.026
ALA B:66 B:66 6.0 0.052 E -151.6 123.9 0.0 0.0 0.052 C:Q9Y275:0.026
L:Q96RJ3:0.035
ALA C:66 C:66 5.0 0.043 E -152.0 124.2 0.0 0.0 0.043 M:Q96RJ3:0.017
A:Q9Y275:0.026
ALA D:66 D:66 24.0 0.209 E -151.2 124.7 20.0 0.174 0.035 E:Q9Y275:0.035
ALA E:66 E:66 5.0 0.043 E -151.3 124.3 0.0 0.0 0.043 F:Q9Y275:0.026
N:Q96RJ3:0.026
ALA F:66 F:66 6.0 0.052 E -151.8 124.9 0.0 0.0 0.052 D:Q9Y275:0.026
O:Q96RJ3:0.035
ALA G:66 G:66 5.0 0.043 E -151.5 123.5 0.0 0.0 0.043 H:Q9Y275:0.026
P:Q96RJ3:0.035
ALA H:66 H:66 21.0 0.183 E -151.7 123.7 17.0 0.148 0.035 I:Q9Y275:0.035
ALA I:66 I:66 5.0 0.043 E -151.7 124.3 0.0 0.0 0.043 G:Q9Y275:0.026
Q:Q96RJ3:0.026
ALA J:66 J:66 7.0 0.061 E -152.3 124.2 0.0 0.0 0.061 R:Q96RJ3:0.035
J:Q9Y275:0.035
4zch 1 O75888,Q9Y275 100.0 2e-102 X-RAY
2015-05-13 ALA A:360 A:366 15.0 0.13 E -137.4 135.1 15.0 0.13 0.0 HOH
4.719
CB
O
ALA B:360 B:366 14.0 0.122 E -146.1 135.6 NA NA NA
4zch 1 O75888,Q9Y275 98.6 8e-99 X-RAY
2015-05-13 ALA A:209 A:215 11.0 0.096 E -149.2 135.9 11.0 0.096 0.0 HOH
3.527
O
O
ALA B:209 B:215 19.0 0.165 E -141.6 122.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y275-f1 1 Q9Y275 100.0 0.0 ALA A:207 A:207 16.0 0.139 E -136.7 135.8