Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38924188 . A C CCDS9366.1:NM_016617.2:c.55Aaa>Caa_NP_057701.1:p.19K>Q Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 LYS A:19 A:19 71.0 0.355 E -126.2 142.9 71.0 0.355 0.0 HOH
 3.467
 CA
 O
LYS B:19 B:19 73.0 0.365 E -129.4 142.6 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 LYS C:19 C:19 71.0 0.355 E -125.2 135.5 56.0 0.28 0.075 B:Q9GZZ9:0.075
 HOH
 6.798
 O
 O
LYS D:19 D:19 70.0 0.35 E -124.0 138.2 58.0 0.29 0.06 A:Q9GZZ9:0.06
 HOH
 3.749
 CA
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 LYS A:33 A:19 68.0 0.34 E -127.5 137.9 68.0 0.34 0.0 HOH
 5.493
 N
 O
LYS B:33 B:19 68.0 0.34 E -126.0 140.0 NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 LYS A:22 A:19 73.0 0.365 E -133.8 135.4 62.0 0.31 0.055 B:None:0.055
 HOH
 4.680
 NZ
 O
LYS C:22 C:19 80.0 0.4 E -135.8 150.0 27.0 0.135 0.265 B:None:0.245
A:P61960:0.04
 HOH
 3.110
 NZ
 O
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 LYS C:16 C:19 73.0 0.365 E -127.7 141.3 60.0 0.3 0.065 B:Q9GZZ9:0.065
 HOH
 6.495
 O
 O
LYS D:16 D:19 70.0 0.35 E -125.8 141.5 59.0 0.295 0.055 A:Q9GZZ9:0.055
 HOH
 3.709
 CA
 O
6h77 2 P61960 100.0 9e-52 X-RAY
 2018-10-31 LYS E:19 Q:19 73.0 0.365 E -131.4 135.8 53.0 0.265 0.1 A:Q9GZZ9:0.1
 HOH
 3.519
 CA
 O
LYS F:19 R:19 70.0 0.35 E -132.0 135.5 NA NA NA
LYS G:19 S:19 74.0 0.37 E -131.3 134.3 NA NA NA
LYS H:19 T:19 72.0 0.36 E -131.6 135.3 50.0 0.25 0.11 B:Q9GZZ9:0.11
 HOH
 3.713
 CA
 O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 LYS G:19 G:29 74.0 0.37 E -108.3 140.1 74.0 0.37 0.0 HOH
 3.462
 CD
 O
LYS H:19 H:29 61.0 0.305 E -115.9 136.7 61.0 0.305 0.0 HOH
 8.998
 CE
 O
LYS I:19 I:29 58.0 0.29 E -153.5 124.4 NA NA NA
LYS J:19 J:29 65.0 0.325 E -125.2 135.4 NA NA NA
LYS K:19 K:29 56.0 0.28 E -129.8 125.7 56.0 0.28 0.0
LYS L:19 L:29 96.0 0.48 E -88.4 91.3 96.0 0.48 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 LYS A:19 A:19 80.0 0.4 E -128.0 138.4