Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38932255 . C A CCDS9366.1:NM_016617.2:c.143gCa>gAa_NP_057701.1:p.48A>E Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 ALA A:48 A:48 36.0 0.313 -145.5 151.8 36.0 0.313 0.0 HOH
 3.547
 CA
 O
ALA B:48 B:48 12.0 0.104 E -146.6 155.7 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 ALA C:48 C:48 25.0 0.217 E -130.0 171.5 0.0 0.0 0.217 A:Q9GZZ9:0.217
 HOH
 3.347
 CB
 O
ALA D:48 D:48 26.0 0.226 E -129.7 171.2 0.0 0.0 0.226 B:Q9GZZ9:0.226
 HOH
 3.224
 CB
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 ALA A:62 A:48 36.0 0.313 E -142.2 152.5 36.0 0.313 0.0
ALA B:62 B:48 37.0 0.322 E -141.8 151.9 NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 ALA A:51 A:48 45.0 0.391 E -134.3 157.5 45.0 0.391 0.0 HOH
 3.815
 N
 O
ALA C:51 C:48 44.0 0.383 E -118.8 158.6 44.0 0.383 0.0 HOH
 6.412
 CB
 O
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 ALA C:45 C:48 24.0 0.209 E -128.7 171.2 0.0 0.0 0.209 A:Q9GZZ9:0.209
 HOH
 3.291
 CB
 O
ALA D:45 D:48 25.0 0.217 E -129.3 171.4 0.0 0.0 0.217 B:Q9GZZ9:0.217
 HOH
 3.184
 CB
 O
6h77 2 P61960 100.0 9e-52 X-RAY
 2018-10-31 ALA E:48 Q:48 51.0 0.443 E -123.4 169.9 13.0 0.113 0.33 B:Q9GZZ9:0.33
 EDO
EDO
HOH
 8.753
9.472
3.576
 N
N
CB
 C1
C2
O
ALA F:48 R:48 52.0 0.452 E -122.4 169.8 NA NA NA
ALA G:48 S:48 50.0 0.435 E -121.7 171.3 NA NA NA
ALA H:48 T:48 51.0 0.443 E -121.7 170.5 13.0 0.113 0.33 A:Q9GZZ9:0.33
 EDO
HOH
 9.275
3.416
 N
CB
 C2
O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 ALA G:48 G:58 32.0 0.278 E -153.3 146.4 9.0 0.078 0.2 A:Q94218:0.2
 HOH
 8.344
 CB
 O
ALA H:48 H:58 30.0 0.261 E -121.8 173.9 7.0 0.061 0.2 B:Q94218:0.2
ALA I:48 I:58 33.0 0.287 E -139.0 152.5 NA NA NA
ALA J:48 J:58 29.0 0.252 E -134.5 161.3 NA NA NA
ALA K:48 K:58 30.0 0.261 E -120.8 166.6 5.0 0.043 0.218 E:Q94218:0.217
ALA L:48 L:58 24.0 0.209 E -141.7 155.8 6.0 0.052 0.157 F:Q94218:0.157

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 ALA A:48 A:48 31.0 0.27 E -119.1 152.1