Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38932257 . A C CCDS9366.1:NM_016617.2:c.145Att>Ctt_NP_057701.1:p.49I>L Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 ILE A:49 A:49 3.0 0.017 E -102.9 133.8 3.0 0.017 0.0 HOH
 2.850
 N
 O
ILE B:49 B:49 3.0 0.017 E -105.0 134.0 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 ILE C:49 C:49 2.0 0.011 E -132.3 136.5 0.0 0.0 0.011 A:Q9GZZ9:0.011
 HOH
 2.851
 N
 O
ILE D:49 D:49 1.0 0.006 E -131.5 134.9 0.0 0.0 0.006 B:Q9GZZ9:0.006
 HOH
 2.703
 N
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 ILE A:63 A:49 9.0 0.051 E -108.2 133.5 9.0 0.051 0.0 HOH
 8.711
 CG2
 O
ILE B:63 B:49 8.0 0.046 E -108.1 132.0 NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 ILE A:52 A:49 8.0 0.046 E -112.7 124.6 8.0 0.046 0.0 HOH
 6.763
 N
 O
ILE C:52 C:49 6.0 0.034 E -119.1 126.7 6.0 0.034 0.0 HOH
 9.462
 N
 O
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 ILE C:46 C:49 2.0 0.011 E -139.9 136.1 0.0 0.0 0.011 A:Q9GZZ9:0.011
 HOH
 2.827
 N
 O
ILE D:46 D:49 2.0 0.011 E -139.7 136.6 0.0 0.0 0.011 B:Q9GZZ9:0.011
 HOH
 2.803
 N
 O
6h77 2 P61960 100.0 9e-52 X-RAY
 2018-10-31 ILE E:49 Q:49 3.0 0.017 E -134.6 136.3 0.0 0.0 0.017 B:Q9GZZ9:0.017
 HOH
 2.907
 N
 O
ILE F:49 R:49 4.0 0.023 E -135.2 135.8 NA NA NA
ILE G:49 S:49 4.0 0.023 E -136.5 137.3 NA NA NA
ILE H:49 T:49 3.0 0.017 E -134.5 136.0 0.0 0.0 0.017 A:Q9GZZ9:0.017
 EDO
HOH
 9.137
2.888
 C
N
 O2
O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 ILE G:49 G:59 9.0 0.051 E -95.7 127.5 9.0 0.051 0.0 HOH
 8.920
 N
 O
ILE H:49 H:59 5.0 0.029 E -126.0 134.2 5.0 0.029 0.0
ILE I:49 I:59 8.0 0.046 E -108.5 124.7 NA NA NA
ILE J:49 J:59 8.0 0.046 E -106.9 121.5 NA NA NA
ILE K:49 K:59 3.0 0.017 E -108.9 124.3 3.0 0.017 0.0
ILE L:49 L:59 6.0 0.034 E -109.3 133.5 6.0 0.034 0.0 HOH
 7.969
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 ILE A:49 A:49 4.0 0.023 E -105.4 135.5