Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38933456 . C A CCDS9366.1:NM_016617.2:c.176cCt>cAt_NP_057701.1:p.59P>H Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 PRO A:59 A:59 34.0 0.234 -80.3 -4.4 34.0 0.234 0.0 HOH
 3.613
 CD
 O
PRO B:59 B:59 34.0 0.234 -85.6 -1.7 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 PRO C:59 C:59 29.0 0.2 -78.0 -7.3 0.0 0.0 0.2 A:Q9GZZ9:0.2
 HOH
 3.504
 CD
 O
PRO D:59 D:59 29.0 0.2 -77.1 -5.7 0.0 0.0 0.2 B:Q9GZZ9:0.2
 HOH
 3.559
 CD
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 PRO A:73 A:59 50.0 0.345 S -72.9 -11.5 50.0 0.345 0.0 HOH
 7.092
 O
 O
PRO B:73 B:59 49.0 0.338 S -72.2 -13.7 NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 PRO A:62 A:59 59.0 0.407 S -71.2 -14.3 59.0 0.407 0.0 HOH
 5.009
 O
 O
PRO C:62 C:59 39.0 0.269 S -76.7 -16.1 39.0 0.269 0.0
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 PRO C:56 C:59 26.0 0.179 -65.5 -8.9 0.0 0.0 0.179 A:Q9GZZ9:0.179
 HOH
 3.702
 CD
 O
PRO D:56 D:59 32.0 0.221 -64.5 -13.4 0.0 0.0 0.221 B:Q9GZZ9:0.221
 HOH
 3.769
 CD
 O
6h77 2 P61960 100.0 9e-52 X-RAY
 2018-10-31 PRO E:59 Q:59 29.0 0.2 -78.4 2.6 0.0 0.0 0.2 B:Q9GZZ9:0.2
 HOH
 3.751
 CD
 O
PRO F:59 R:59 29.0 0.2 -77.7 2.5 NA NA NA
PRO G:59 S:59 30.0 0.207 -79.9 2.6 NA NA NA
PRO H:59 T:59 29.0 0.2 -79.2 3.8 0.0 0.0 0.2 A:Q9GZZ9:0.2
 HOH
 3.848
 CD
 O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 PRO G:59 G:69 42.0 0.29 T -78.0 3.2 20.0 0.138 0.152 A:Q94218:0.152
 HOH
 3.879
 CG
 O
PRO H:59 H:69 35.0 0.241 -73.8 -12.0 19.0 0.131 0.11 B:Q94218:0.11
PRO I:59 I:69 31.0 0.214 -73.2 -13.1 NA NA NA
PRO J:59 J:69 45.0 0.31 S -78.2 -9.1 NA NA NA
PRO K:59 K:69 34.0 0.234 -71.6 -9.7 17.0 0.117 0.117 E:Q94218:0.117
PRO L:59 L:69 26.0 0.179 -79.9 2.6 12.0 0.083 0.096 F:Q94218:0.097
 HOH
 5.848
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 PRO A:59 A:59 43.0 0.297 S -75.9 -9.1