Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38934881 . G A CCDS9366.1:NM_016617.2:c.224cGg>cAg_NP_057701.1:p.75R>Q Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 ARG A:75 A:75 81.0 0.36 E -127.4 148.2 81.0 0.36 0.0 HOH
 2.916
 NE
 O
ARG B:75 B:75 81.0 0.36 E -127.8 148.3 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 ARG C:75 C:75 69.0 0.307 E -138.5 124.0 64.0 0.284 0.023 A:Q9GZZ9:0.022
 HOH
 4.198
 NH2
 O
ARG D:75 D:75 75.0 0.333 E -136.1 123.7 54.0 0.24 0.093 B:Q9GZZ9:0.093
 HOH
 2.678
 NH2
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 ARG A:89 A:75 69.0 0.307 E -119.0 144.7 69.0 0.307 0.0 HOH
 2.707
 NH1
 O
ARG B:89 B:75 81.0 0.36 E -118.9 146.8 NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 ARG A:78 A:75 90.0 0.4 E -117.2 140.1 90.0 0.4 0.0 HOH
 5.169
 N
 O
ARG C:78 C:75 87.0 0.387 E -117.5 137.8 87.0 0.387 0.0 HOH
 3.474
 NE
 O
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 ARG C:72 C:75 60.0 0.267 E -136.6 130.7 57.0 0.253 0.014 A:Q9GZZ9:0.013
 HOH
 4.420
 NH2
 O
ARG D:72 D:75 57.0 0.253 E -136.7 130.3 55.0 0.244 0.009 B:Q9GZZ9:0.009
 HOH
 2.562
 NH2
 O
6h77 2 P61960 100.0 9e-52 X-RAY
 2018-10-31 ARG E:75 Q:75 79.0 0.351 E -131.5 125.0 47.0 0.209 0.142 B:Q9GZZ9:0.142
 HOH
 7.170
 O
 O
ARG F:75 R:75 80.0 0.356 E -130.3 124.8 NA NA NA
ARG G:75 S:75 54.0 0.24 E -131.9 124.0 NA NA NA
ARG H:75 T:75 56.0 0.249 E -132.6 124.4 53.0 0.236 0.013 A:Q9GZZ9:0.013
 EDO
EDO
HOH
 5.418
3.231
2.476
 NH1
NE
NH1
 O2
O2
O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 ARG G:75 G:85 80.0 0.356 E -139.6 126.4 44.0 0.196 0.16 C:Q94218:0.018
A:Q94218:0.142
 HOH
 3.007
 NH1
 O
ARG H:75 H:85 74.0 0.329 E -134.0 140.0 48.0 0.213 0.116 E:Q94218:0.116
ARG I:75 I:85 67.0 0.298 E -133.0 139.9 NA NA NA
ARG J:75 J:85 64.0 0.284 E -129.0 167.0 NA NA NA
ARG K:75 K:85 68.0 0.302 E -131.1 133.5 38.0 0.169 0.133 B:Q94218:0.133
ARG L:75 L:85 59.0 0.262 E -166.3 127.5 59.0 0.262 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 ARG A:75 A:75 97.0 0.431 E -129.3 133.4