Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr13 38934898 . C A CCDS9366.1:NM_016617.2:c.241Cgt>Agt_NP_057701.1:p.81R>S Homo sapiens ubiquitin fold modifier 1 (UFM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ia7 1 P61960 100.0 4e-56 X-RAY
 2017-03-08 ARG A:81 NA:NA DO NA DO DO DO NA NA NA
ARG B:81 B:81 177.0 0.787 -144.9 121.2 NA NA NA
5iaa 2 P61960 100.0 4e-56 X-RAY
 2016-09-28 ARG C:81 C:81 218.0 0.969 -95.9 -25.2 35.0 0.156 0.813 A:Q9GZZ9:0.813
 HOH
 4.645
 N
 O
ARG D:81 D:81 215.0 0.956 -98.9 -24.9 64.0 0.284 0.672 B:Q9GZZ9:0.671
 HOH
 2.944
 N
 O
5ia8 1 E7EQ61,P61960 100.0 5e-56 X-RAY
 2017-03-08 ARG A:95 NA:NA DO NA DO DO DO NA NA NA
ARG B:95 NA:NA DO NA DO DO DO NA NA NA
5hkh 1 P61960 100.0 3e-55 X-RAY
 2016-03-09 ARG A:84 A:81 210.0 0.933 -105.5 157.2 210.0 0.933 0.0 HOH
 4.258
 N
 O
ARG C:84 NA:NA DO NA DO DO DO NA NA NA
5l95 2 P61960 100.0 1e-53 X-RAY
 2016-09-21 ARG C:78 C:81 219.0 0.973 -94.8 -31.8 43.0 0.191 0.782 A:Q9GZZ9:0.782
 AMP
HOH
 6.123
2.993
 O
N
 O1P
O
ARG D:78 D:81 218.0 0.969 -96.2 -32.8 58.0 0.258 0.711 B:Q9GZZ9:0.711
 HOH
 3.216
 N
 O
5xda 2 P34661 90.24 4e-51 X-RAY
 2018-02-28 ARG G:81 G:91 243.0 1.0 -133.8 111.2 156.0 0.693 0.307 A:Q94218:0.387
 HOH
 4.113
 CD
 O
ARG H:81 H:91 244.0 1.0 -105.7 113.1 145.0 0.644 0.356 B:Q94218:0.44
ARG I:81 I:91 223.0 0.991 -132.6 114.9 NA NA NA
ARG J:81 J:91 240.0 1.0 -63.6 115.8 NA NA NA
ARG K:81 K:91 235.0 1.0 -121.4 113.9 139.0 0.618 0.382 E:Q94218:0.427
ARG L:81 L:91 231.0 1.0 -64.0 116.4 128.0 0.569 0.431 F:Q94218:0.458

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61960-f1 1 P61960 100.0 2e-58 ARG A:81 A:81 201.0 0.893 G -84.8 -4.6