Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 50360681 . A C CCDS9695.1:NM_001663.3:c.227cAt>cCt_NP_001654.1:p.76H>P Homo sapiens ADP ribosylation factor 6 (ARF6), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2a5d 1 P62330 100.0 8e-131 X-RAY
 2005-08-16 HIS A:76 A:76 116.0 0.595 G -81.1 -2.7 41.0 0.21 0.385 B:P01555:0.385
 NA
GOL
HOH
 9.000
8.957
2.656
 O
NE2
ND1
 NA
O2
O
2a5f 1 P62330 100.0 8e-131 X-RAY
 2005-08-16 HIS A:76 A:76 114.0 0.585 G -82.6 -0.2 37.0 0.19 0.395 B:P01555:0.395
 NA
HOH
 8.916
2.651
 O
ND1
 NA
O
2j5x 1 P62330 100.0 8e-131 X-RAY
 2006-09-21 HIS A:76 A:76 153.0 0.785 H -53.2 -18.1 153.0 0.785 0.0 HOH
 3.295
 O
 O
HIS B:76 B:76 157.0 0.805 G -54.7 -26.5 NA NA NA
1e0s 1 P62330 100.0 6e-130 X-RAY
 2000-04-18 HIS A:75 A:76 130.0 0.667 G -66.2 -15.8 130.0 0.667 0.0 HOH
 2.868
 NE2
 O
2a5g 1 P62330 99.43 9e-130 X-RAY
 2005-08-16 HIS A:76 A:76 134.0 0.687 G -79.2 4.7 53.0 0.272 0.415 B:P01555:0.415
 NA
HOH
 9.740
2.868
 O
O
 NA
O
6bbq 1 O08967,P62330 99.42 2e-123 EM
 2018-01-10 HIS A:422 A:474 20.0 0.103 G -55.0 -35.1 20.0 0.103 0.0
6bbp 1 O08967,P62330 99.42 9e-123 EM
 2018-01-10 HIS A:422 A:474 22.0 0.113 G -55.0 -35.2 22.0 0.113 0.0
3n5c 1 P62330 100.0 6e-121 X-RAY
 2010-08-18 HIS A:63 A:76 24.0 0.123 -81.3 171.1 24.0 0.123 0.0 CL
CL
HOH
 3.242
7.915
2.727
 N
N
O
 CL
CL
O
HIS B:63 B:76 32.0 0.164 -82.8 171.8 NA NA NA
3pcr 2 P62330 100.0 6e-121 X-RAY
 2011-01-05 HIS B:63 B:76 148.0 0.759 H -60.5 -1.8 148.0 0.759 0.0 HOH
 2.715
 O
 O
3lvq 1 Q8TDY4,P62330 98.8 7e-121 X-RAY
 2010-06-09 HIS A:385 E:76 147.0 0.754 G -59.3 -32.9 147.0 0.754 0.0
3lvr 1 Q8TDY4,3LVQ,P62330 98.8 7e-121 X-RAY
 2010-06-09 HIS A:385 E:76 142.0 0.728 G -65.8 -27.8 142.0 0.728 0.0
2w83 1 P62330 99.39 1e-120 X-RAY
 2009-07-14 HIS A:66 A:76 141.0 0.723 G -81.6 -8.4 15.0 0.077 0.646 D:O60271:0.277
C:O60271:0.492
 GOL
DIO
DIO
HOH
 5.405
9.978
6.665
2.778
 N
CD2
NE2
NE2
 O3
C2
C2'
O
HIS B:66 B:76 115.0 0.59 G -73.1 -10.6 7.0 0.036 0.554 D:O60271:0.4
C:O60271:0.287
 HOH
 2.863
 ND1
 O
HIS E:66 E:76 141.0 0.723 G -68.3 -10.5 141.0 0.723 0.0 DIO
HOH
 6.756
3.318
 NE2
O
 C2
O
3vhx 1 P62331 99.39 1e-120 X-RAY
 2012-05-16 HIS A:65 A:76 115.0 0.59 G -79.6 -2.3 16.0 0.082 0.508 B:Q02241:0.508
 HOH
 7.699
 NE2
 O
HIS C:65 C:76 112.0 0.574 G -67.8 0.2 13.0 0.067 0.507 D:Q02241:0.508
 HOH
 2.804
 O
 O
HIS E:65 E:76 133.0 0.682 G -78.7 1.4 NA NA NA
HIS G:65 G:76 130.0 0.667 G -75.5 1.1 NA NA NA
4fme 3 P62330 100.0 3e-119 X-RAY
 2012-09-05 HIS C:63 C:76 132.0 0.677 G -67.1 3.6 132.0 0.677 0.0
HIS F:63 F:76 131.0 0.672 G -66.6 3.2 NA NA NA
4kax 1 P62330 98.76 3e-118 X-RAY
 2013-08-14 HIS A:71 A:76 136.0 0.697 G -54.6 -35.1 12.0 0.062 0.635 B:O43739:0.636
 K
HOH
 2.858
2.737
 O
ND1
 K
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62330-f1 1 P62330 100.0 3e-131 HIS A:76 A:76 120.0 0.615 G -69.7 -10.2