Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 50360777 . A C CCDS9695.1:NM_001663.3:c.323aAt>aCt_NP_001654.1:p.108N>T Homo sapiens ADP ribosylation factor 6 (ARF6), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2a5d 1 P62330 100.0 8e-131 X-RAY
 2005-08-16 ASN A:108 A:108 116.0 0.725 T -87.2 -3.7 116.0 0.725 0.0 HOH
 2.875
 OD1
 O
2a5f 1 P62330 100.0 8e-131 X-RAY
 2005-08-16 ASN A:108 A:108 116.0 0.725 T -86.2 -2.1 116.0 0.725 0.0 HOH
 3.019
 OD1
 O
2j5x 1 P62330 100.0 8e-131 X-RAY
 2006-09-21 ASN A:108 A:108 110.0 0.688 H -82.6 -21.5 110.0 0.688 0.0
ASN B:108 B:108 114.0 0.713 T -80.8 -17.4 NA NA NA
1e0s 1 P62330 100.0 6e-130 X-RAY
 2000-04-18 ASN A:107 A:108 124.0 0.775 T -85.7 -13.0 124.0 0.775 0.0 HOH
 4.267
 C
 O
2a5g 1 P62330 99.43 9e-130 X-RAY
 2005-08-16 ASN A:108 A:108 100.0 0.625 T -88.6 -0.0 100.0 0.625 0.0 HOH
 6.896
 OD1
 O
6bbq 1 O08967,P62330 99.42 2e-123 EM
 2018-01-10 ASN A:454 A:506 119.0 0.744 T -87.3 -7.4 119.0 0.744 0.0
6bbp 1 O08967,P62330 99.42 9e-123 EM
 2018-01-10 ASN A:454 A:506 120.0 0.75 T -87.3 -7.4 120.0 0.75 0.0
3n5c 1 P62330 100.0 6e-121 X-RAY
 2010-08-18 ASN A:95 A:108 92.0 0.575 T -87.3 -8.8 92.0 0.575 0.0 CL
HOH
 9.102
3.151
 C
O
 CL
O
ASN B:95 B:108 121.0 0.756 T -88.0 -1.8 NA NA NA
3pcr 2 P62330 100.0 6e-121 X-RAY
 2011-01-05 ASN B:95 B:108 116.0 0.725 H -65.6 -41.9 116.0 0.725 0.0 HOH
 2.884
 ND2
 O
3lvq 1 Q8TDY4,P62330 98.8 7e-121 X-RAY
 2010-06-09 ASN A:417 E:108 132.0 0.825 T -88.4 -14.5 132.0 0.825 0.0
3lvr 1 Q8TDY4,3LVQ,P62330 98.8 7e-121 X-RAY
 2010-06-09 ASN A:417 E:108 123.0 0.769 T -102.4 3.6 123.0 0.769 0.0
2w83 1 P62330 99.39 1e-120 X-RAY
 2009-07-14 ASN A:98 A:108 120.0 0.75 T -85.8 -6.0 120.0 0.75 0.0 GOL
HOH
 9.044
3.019
 N
ND2
 C1
O
ASN B:98 B:108 93.0 0.581 T -88.0 -2.6 93.0 0.581 0.0 HOH
 2.807
 ND2
 O
ASN E:98 E:108 114.0 0.713 T -83.4 -10.4 114.0 0.713 0.0 HOH
 2.965
 ND2
 O
3vhx 1 P62331 99.39 1e-120 X-RAY
 2012-05-16 ASN A:97 A:108 116.0 0.725 T -90.6 -14.6 116.0 0.725 0.0
ASN C:97 C:108 127.0 0.794 T -82.0 -15.1 127.0 0.794 0.0 HOH
 4.530
 OD1
 O
ASN E:97 E:108 123.0 0.769 T -87.6 -10.1 NA NA NA
ASN G:97 G:108 127.0 0.794 T -83.7 -5.8 NA NA NA
4fme 3 P62330 100.0 3e-119 X-RAY
 2012-09-05 ASN C:95 C:108 95.0 0.594 H -92.5 -49.8 95.0 0.594 0.0
ASN F:95 F:108 98.0 0.613 H -92.8 -49.8 NA NA NA
4kax 1 P62330 98.76 3e-118 X-RAY
 2013-08-14 ASN A:103 A:108 119.0 0.744 T -87.6 -7.7 119.0 0.744 0.0 HOH
 3.167
 ND2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62330-f1 1 P62330 100.0 3e-131 ASN A:108 A:108 125.0 0.781 T -85.1 -4.6