Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 54417052 . G A CCDS9715.1:NM_001202.3:c.925Cgg>Tgg_NP_001193.2:p.309R>W Homo sapiens bone morphogenetic protein 4 (BMP4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6omn 1 P12643 88.89 3e-69 X-RAY
 2019-05-08 LYS A:9 E:15 119.0 0.595 E -160.4 168.5 119.0 0.595 0.0 NAG
NAG
HOH
 3.938
9.671
9.118
 CA
C
O
 C8
C6
O
LYS B:9 F:15 105.0 0.525 E -156.7 179.8 105.0 0.525 0.0 NAG
NAG
 4.173
8.701
 CA
C
 O7
O6
LYS C:9 G:15 120.0 0.6 E -154.0 163.1 NA NA NA
LYS D:9 H:15 112.0 0.56 E -166.2 167.2 NA NA NA
2h64 1 P12643 85.71 1e-68 X-RAY
 2007-04-10 LYS A:15 A:15 63.0 0.315 E -164.1 171.2 61.0 0.305 0.01 B:P36894:0.01
 HOH
 3.341
 CE
 O
1es7 1 P12643 87.5 2e-68 X-RAY
 2000-10-07 LYS A:17 A:15 114.0 0.57 E -165.4 167.9 70.0 0.35 0.22 B:P36894:0.22
 HOH
 3.538
 CG
 O
LYS C:17 C:515 113.0 0.565 E -164.6 167.6 68.0 0.34 0.225 D:P36894:0.225
 HOH
 3.716
 CG
 O
2qj9 1 P12643 87.5 2e-68 X-RAY
 2008-01-15 LYS A:17 B:15 111.0 0.555 E -164.3 169.1 66.0 0.33 0.225 C:P36894:0.225
 HOH
 3.436
 CG
 O
LYS B:17 A:15 102.0 0.51 E -147.7 175.5 57.0 0.285 0.225 D:P36894:0.225
 HOH
 3.106
 CD
 O
2qja 1 P12643 87.5 2e-68 X-RAY
 2008-01-15 LYS A:17 A:15 105.0 0.525 E -141.6 173.9 64.0 0.32 0.205 C:P36894:0.205
 HOH
 7.202
 O
 O
LYS B:17 B:15 106.0 0.53 E -146.0 173.6 73.0 0.365 0.165 D:P36894:0.165
 HOH
 8.505
 CE
 O
2qjb 1 P12643 87.5 2e-68 X-RAY
 2008-01-15 LYS A:17 A:15 106.0 0.53 E -156.4 175.9 71.0 0.355 0.175 C:P36894:0.175
 HOH
 4.870
 C
 O
LYS B:17 B:15 109.0 0.545 E -157.5 172.9 71.0 0.355 0.19 D:P36894:0.19
 HOH
 2.533
 CD
 O
1rew 1 P12643 87.5 4e-68 X-RAY
 2004-05-04 LYS A:15 A:15 115.0 0.575 E -162.0 171.8 78.0 0.39 0.185 C:P36894:0.185
 HOH
 3.322
 CB
 O
LYS B:15 B:15 122.0 0.61 E -157.0 173.4 85.0 0.425 0.185 D:P36894:0.185
 HOH
 3.495
 CB
 O
2goo 1 P12643 87.5 4e-68 X-RAY
 2006-05-09 LYS A:15 A:15 105.0 0.525 E -158.1 171.7 65.0 0.325 0.2 B:P36894:0.2
 HOH
 3.413
 CD
 O
LYS D:15 D:15 119.0 0.595 E -164.0 167.8 108.0 0.54 0.055 E:P36894:0.055
 HOH
 3.591
 CG
 O
2h62 1 P12643 87.5 4e-68 X-RAY
 2007-04-10 LYS A:15 A:15 81.0 0.405 E -161.1 172.7 81.0 0.405 0.0 HOH
 2.798
 NZ
 O
LYS B:15 B:15 110.0 0.55 E -158.7 169.8 88.0 0.44 0.11 C:P36894:0.11
 HOH
 2.815
 NZ
 O
3bmp 1 P12643 87.5 4e-68 X-RAY
 2000-03-12 LYS A:15 A:15 91.0 0.455 E -160.9 167.9 91.0 0.455 0.0 HOH
 3.551
 CE
 O
4uhy 1 P12643 87.5 4e-68 X-RAY
 2015-05-06 LYS A:15 A:297 96.0 0.48 E -154.7 164.1 96.0 0.48 0.0
LYS B:15 B:297 94.0 0.47 E -154.6 163.2 94.0 0.47 0.0
4uhz 1 P12643 87.5 4e-68 X-RAY
 2015-05-06 LYS A:15 A:297 103.0 0.515 E -137.2 162.7 103.0 0.515 0.0 SO4
SO4
SO4
 3.217
5.091
6.672
 CE
C
NZ
 O2
O1
O2
4ui0 1 P12643 87.5 4e-68 X-RAY
 2015-05-06 LYS A:15 A:297 93.0 0.465 E -163.1 167.2 93.0 0.465 0.0 HOH
 7.307
 O
 O
LYS B:15 B:297 96.0 0.48 E -162.5 167.4 96.0 0.48 0.0 HOH
 7.860
 O
 O
4ui1 1 P12643 87.5 4e-68 X-RAY
 2015-05-06 LYS A:15 A:297 105.0 0.525 E -159.4 174.4 105.0 0.525 0.0 HOH
 3.292
 CG
 O
LYS B:15 B:297 105.0 0.525 E -159.7 174.0 NA NA NA
4ui2 2 P12643 87.5 4e-68 X-RAY
 2015-05-06 LYS B:15 B:297 123.0 0.615 E -137.6 173.3 123.0 0.615 0.0 SRT
 6.146
 CD
 O41
3bk3 1 P12643 85.71 5e-68 X-RAY
 2008-05-27 LYS A:15 A:15 89.0 0.445 E -174.2 151.0 89.0 0.445 0.0 HOH
 3.027
 NZ
 O
LYS B:15 B:15 97.0 0.485 E -147.8 173.0 97.0 0.485 0.0 HOH
 3.711
 NZ
 O
1reu 1 P12643 90.2 5e-68 X-RAY
 2004-05-04 LYS A:4 A:15 133.0 0.665 E -149.1 170.8 133.0 0.665 0.0 HOH
 6.606
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p12644-f1 1 P12644 100.0 0.0 ARG A:309 A:309 109.0 0.484 E -159.5 168.1