Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93176214 . T A CCDS9904.1:NM_001008530.2:c.823Atc>Ttc_NP_001008530.1:p.275I>F Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 ILE A:263 A:275 4.0 0.023 G -69.9 -20.9 4.0 0.023 0.0
ILE B:263 B:275 0.0 0.0 G -70.3 -24.4 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ILE A:277 A:277 5.0 0.029 G -68.9 -31.6 5.0 0.029 0.0 HOH
 5.105
 CG1
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ILE A:277 A:277 4.0 0.023 G -57.8 -30.6 4.0 0.023 0.0 HOH
 5.384
 CD1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 ILE A:277 A:277 3.0 0.017 G -70.8 -29.7 3.0 0.017 0.0 HOH
 5.553
 CD1
 O
ILE B:277 B:277 7.0 0.04 G -78.3 -31.3 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ILE A:250 A:280 2.0 0.011 G -59.3 -29.5 2.0 0.011 0.0 NAG
HOH
 3.994
5.254
 CG1
CD1
 O5
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ILE A:250 A:280 3.0 0.017 G -53.7 -35.2 3.0 0.017 0.0 NAG
HOH
 4.040
5.213
 N
CD1
 O6
O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ILE A:250 A:275 7.0 0.04 G -62.0 -27.9 7.0 0.04 0.0 NAG
SO4
SO4
HOH
 4.333
9.521
9.283
4.914
 CG1
N
O
CD1
 O6
O2
O2
O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ILE A:250 A:275 5.0 0.029 G -68.9 -23.2 5.0 0.029 0.0 SO4
NAG
HOH
 9.456
4.270
4.880
 N
CG1
CD1
 O3
O5
O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ILE A:250 A:275 2.0 0.011 G -61.2 -28.7 2.0 0.011 0.0 NAG
HOH
 4.717
7.682
 CG1
CG2
 O5
O
ILE B:250 B:275 1.0 0.006 G -62.2 -29.1 1.0 0.006 0.0 NAG
HOH
 3.983
8.942
 CG1
CG2
 O5
O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 ILE A:250 A:275 4.0 0.023 G -58.3 -31.4 4.0 0.023 0.0 NAG
NAG
HOH
 4.192
7.476
3.480
 CG1
N
CG1
 O6
C8
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 ILE A:250 A:275 4.0 0.023 G -58.3 -29.8 4.0 0.023 0.0 NAG
NAG
HOH
 4.138
7.526
3.403
 CG1
N
CG1
 O6
C8
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ILE B:250 A:275 5.0 0.029 G -58.3 -25.5 5.0 0.029 0.0 SO4
NAG
5KN
HOH
 9.096
3.910
6.122
5.141
 O
CG1
N
CD1
 O1
O6
O
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ILE B:250 A:275 4.0 0.023 G -63.6 -24.5 4.0 0.023 0.0 NAG
SO4
3Y7
HOH
 4.124
9.212
6.205
5.157
 CG1
O
N
CD1
 O6
O4
O
O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ILE A:250 A:275 4.0 0.023 G -58.5 -30.3 4.0 0.023 0.0 NAG
HOH
 4.830
3.296
 CG1
CG1
 O5
O
ILE B:250 B:275 5.0 0.029 G -56.8 -28.7 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ILE A:250 B:275 6.0 0.034 G -56.6 -30.2 NA NA NA
ILE B:250 A:275 5.0 0.029 G -58.3 -29.8 5.0 0.029 0.0 NAG
HOH
 4.807
3.330
 CG1
CG1
 O6
O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 ILE A:250 A:275 5.0 0.029 G -61.6 -26.6 5.0 0.029 0.0 NAG
HOH
 4.008
3.329
 CG1
CG1
 O6
O
ILE B:250 B:275 6.0 0.034 G -52.8 -32.3 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 ILE A:250 A:280 5.0 0.029 G -59.9 -28.8 5.0 0.029 0.0 NAG
HOH
 3.849
3.545
 CG1
CG1
 O5
O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 ILE A:251 A:277 4.0 0.023 G -70.8 -28.1 4.0 0.023 0.0 HOH
 5.084
 CG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ILE A:275 A:275 2.0 0.011 G -61.0 -31.6