Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93178005 . T A CCDS9904.1:NM_001008530.2:c.818aAa>aTa_NP_001008530.1:p.273K>I Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 LYS A:261 A:273 84.0 0.42 G -66.8 -25.4 84.0 0.42 0.0
LYS B:261 B:273 91.0 0.455 G -57.4 -27.6 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 LYS A:275 A:275 93.0 0.465 G -68.1 -14.2 93.0 0.465 0.0 HOH
 4.063
 NZ
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 LYS A:275 A:275 102.0 0.51 G -62.9 -23.4 102.0 0.51 0.0 HOH
 2.967
 N
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 LYS A:275 A:275 103.0 0.515 G -63.4 -13.6 103.0 0.515 0.0 HOH
 6.252
 CG
 O
LYS B:275 B:275 101.0 0.505 G -76.8 -11.6 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 LYS A:248 A:278 92.0 0.46 G -68.6 -20.4 92.0 0.46 0.0 NAG
GOL
HOH
 5.803
3.050
3.164
 N
NZ
N
 C1
O1
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 LYS A:248 A:278 96.0 0.48 G -76.2 -27.7 96.0 0.48 0.0 NAG
HOH
 5.796
3.086
 N
N
 C1
O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 LYS A:248 A:273 99.0 0.495 G -61.9 -30.9 99.0 0.495 0.0 NAG
SO4
SO4
HOH
 6.045
5.385
9.070
3.191
 N
CB
O
N
 C1
O2
O2
O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 LYS A:248 A:273 99.0 0.495 G -70.2 -19.7 99.0 0.495 0.0 SO4
NAG
HOH
 5.240
6.002
2.874
 CB
N
N
 O3
C1
O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 LYS A:248 A:273 121.0 0.605 G -64.3 -24.6 121.0 0.605 0.0 NAG
HOH
 6.041
3.380
 N
CG
 C1
O
LYS B:248 B:273 106.0 0.53 G -70.1 -31.0 106.0 0.53 0.0 NAG
HOH
 5.824
9.978
 N
N
 C1
O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 LYS A:248 A:273 92.0 0.46 G -71.0 -20.2 92.0 0.46 0.0 NAG
NAG
HOH
 5.940
9.482
2.695
 N
C
NZ
 C1
C8
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 LYS A:248 A:273 95.0 0.475 G -76.4 -16.8 95.0 0.475 0.0 NAG
NAG
HOH
 5.876
9.522
2.590
 N
C
NZ
 C1
C8
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 LYS B:248 A:273 103.0 0.515 G -70.9 -18.6 103.0 0.515 0.0 SO4
NAG
5KN
HOH
 9.229
6.035
2.946
2.920
 O
N
CB
N
 O1
C1
C6
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 LYS B:248 A:273 104.0 0.52 G -72.2 -11.3 104.0 0.52 0.0 NAG
SO4
3Y7
HOH
 6.074
9.294
3.007
5.260
 N
O
O
NZ
 C1
O4
O
O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 LYS A:248 A:273 96.0 0.48 G -62.7 -26.4 96.0 0.48 0.0 NAG
HOH
 6.013
2.780
 N
N
 C1
O
LYS B:248 B:273 98.0 0.49 G -67.3 -28.5 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 LYS A:248 B:273 99.0 0.495 G -62.6 -31.5 NA NA NA
LYS B:248 A:273 99.0 0.495 G -69.7 -27.2 99.0 0.495 0.0 NAG
HOH
 5.959
2.950
 N
N
 C1
O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 LYS A:248 A:273 121.0 0.605 G -70.5 -17.3 121.0 0.605 0.0 NAG
HOH
 5.961
2.875
 N
N
 C1
O
LYS B:248 B:273 95.0 0.475 G -63.3 -17.4 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 LYS A:248 A:278 103.0 0.515 G -70.6 -12.6 103.0 0.515 0.0 NAG
HOH
 5.907
2.920
 N
NZ
 C1
O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 LYS A:249 A:275 93.0 0.465 G -74.0 -13.4 93.0 0.465 0.0 HOH
 6.883
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 LYS A:273 A:273 120.0 0.6 G -63.5 -20.3