Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93178208 . C A CCDS9904.1:NM_001008530.2:c.703Gtc>Ttc_NP_001008530.1:p.235V>F Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 VAL A:223 A:235 0.0 0.0 H -75.1 -36.5 0.0 0.0 0.0
VAL B:223 B:235 0.0 0.0 H -75.1 -43.2 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 VAL A:237 A:237 0.0 0.0 H -57.2 -37.3 0.0 0.0 0.0 HOH
 4.089
 CG2
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 VAL A:237 A:237 0.0 0.0 H -58.3 -40.0 0.0 0.0 0.0 HOH
 3.814
 CG2
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 VAL A:237 A:237 0.0 0.0 H -53.5 -38.7 0.0 0.0 0.0 HOH
 4.986
 CG2
 O
VAL B:237 B:237 0.0 0.0 H -58.8 -35.3 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 VAL A:210 A:240 0.0 0.0 H -64.1 -31.1 0.0 0.0 0.0 HOH
 3.832
 CG1
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 VAL A:210 A:240 0.0 0.0 H -62.7 -34.5 0.0 0.0 0.0 HOH
 3.908
 CB
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:210 A:235 0.0 0.0 H -59.9 -32.6 0.0 0.0 0.0 HOH
 2.887
 C
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:210 A:235 0.0 0.0 H -59.2 -38.1 0.0 0.0 0.0 HOH
 3.603
 CG2
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:210 A:235 0.0 0.0 H -49.6 -41.7 0.0 0.0 0.0 HG
HOH
 3.279
7.855
 CG1
N
 HG
O
VAL B:210 B:235 3.0 0.019 H -59.5 -34.3 3.0 0.019 0.0 HG
HOH
 3.863
6.542
 CG1
CG1
 HG
O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 VAL A:210 A:235 0.0 0.0 H -60.8 -36.0 0.0 0.0 0.0 HOH
 3.735
 CG2
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 VAL A:210 A:235 0.0 0.0 H -65.0 -30.7 0.0 0.0 0.0 HOH
 3.728
 CG1
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:210 A:235 4.0 0.026 H -58.7 -35.8 4.0 0.026 0.0 EMC
HOH
 3.678
3.936
 CG1
CG2
 HG
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:210 A:235 0.0 0.0 H -57.9 -37.2 0.0 0.0 0.0 HOH
 3.720
 CG2
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:210 A:235 0.0 0.0 H -66.3 -30.9 0.0 0.0 0.0 HOH
 3.836
 CG1
 O
VAL B:210 B:235 0.0 0.0 H -67.4 -31.6 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:210 B:235 0.0 0.0 H -66.8 -34.5 NA NA NA
VAL B:210 A:235 0.0 0.0 H -67.7 -30.0 0.0 0.0 0.0 HOH
 3.833
 CG1
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 VAL A:210 A:235 0.0 0.0 H -63.0 -33.8 0.0 0.0 0.0 HOH
 3.798
 CG1
 O
VAL B:210 B:235 0.0 0.0 H -65.2 -33.2 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 VAL A:210 A:240 0.0 0.0 H -64.6 -30.8 0.0 0.0 0.0 HOH
 3.704
 CB
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 VAL A:211 A:237 0.0 0.0 H -61.7 -28.1 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 VAL A:235 A:235 0.0 0.0 H -61.7 -35.8