Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93178231 . G A CCDS9904.1:NM_001008530.2:c.680aCg>aTg_NP_001008530.1:p.227T>M Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 THR A:215 A:227 0.0 0.0 E -147.0 160.1 0.0 0.0 0.0
THR B:215 B:227 0.0 0.0 E -149.5 162.7 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:229 A:229 0.0 0.0 E -163.3 173.4 0.0 0.0 0.0 HOH
 3.119
 OG1
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:229 A:229 0.0 0.0 E -161.8 173.8 0.0 0.0 0.0 HOH
 3.063
 OG1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 THR A:229 A:229 0.0 0.0 E -171.3 165.4 0.0 0.0 0.0 HOH
 3.147
 OG1
 O
THR B:229 B:229 0.0 0.0 E -165.7 179.1 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:202 A:232 0.0 0.0 E -163.5 172.8 0.0 0.0 0.0 HOH
 3.410
 OG1
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:202 A:232 0.0 0.0 E -160.3 -179.3 0.0 0.0 0.0 HOH
 3.250
 OG1
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:202 A:227 3.0 0.021 E -164.9 164.9 3.0 0.021 0.0 NAG
HOH
 8.596
2.865
 O
OG1
 C8
O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:202 A:227 3.0 0.021 E -163.5 166.2 3.0 0.021 0.0 SO4
NAG
HOH
 9.834
8.538
2.798
 O
O
OG1
 O1
C8
O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:202 A:227 3.0 0.021 E -160.8 167.1 3.0 0.021 0.0 HOH
 9.551
 N
 O
THR B:202 B:227 5.0 0.036 E -161.8 172.7 5.0 0.036 0.0 HOH
 3.670
 CA
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 THR A:202 A:227 2.0 0.014 E -158.6 162.1 2.0 0.014 0.0 IOD
HOH
 7.890
2.682
 OG1
OG1
 I
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 THR A:202 A:227 3.0 0.021 E -159.5 163.0 3.0 0.021 0.0 IOD
HOH
 7.885
2.760
 OG1
OG1
 I
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:202 A:227 6.0 0.043 E -164.5 162.6 6.0 0.043 0.0 SO4
HOH
 9.644
3.246
 O
OG1
 O3
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:202 A:227 5.0 0.036 E -165.6 168.4 5.0 0.036 0.0 SO4
HOH
 9.843
3.117
 O
OG1
 O1
O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:202 A:227 3.0 0.021 E -157.9 157.8 3.0 0.021 0.0 HOH
 2.919
 OG1
 O
THR B:202 B:227 3.0 0.021 E -162.5 161.6 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:202 B:227 3.0 0.021 E -165.2 157.1 NA NA NA
THR B:202 A:227 4.0 0.029 E -161.8 156.7 4.0 0.029 0.0 HOH
 2.868
 OG1
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 THR A:202 A:227 5.0 0.036 E -156.8 154.0 5.0 0.036 0.0 HOH
 3.001
 OG1
 O
THR B:202 B:227 4.0 0.029 E -168.6 159.1 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 THR A:202 A:232 5.0 0.036 E -175.0 151.8 5.0 0.036 0.0 HOH
 3.025
 OG1
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 THR A:203 A:229 5.0 0.036 S -147.3 155.9 5.0 0.036 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 THR A:227 A:227 0.0 0.0 E -155.7 173.1