Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93178279 . T A CCDS9904.1:NM_001008530.2:c.632aAc>aTc_NP_001008530.1:p.211N>I Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 ASN A:199 A:211 25.0 0.156 -65.7 154.5 25.0 0.156 0.0
ASN B:199 B:211 27.0 0.169 -70.7 157.5 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASN A:213 A:213 30.0 0.188 -60.7 167.7 30.0 0.188 0.0 HOH
 4.494
 CG
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASN A:213 A:213 29.0 0.181 -79.4 173.8 29.0 0.181 0.0 HOH
 2.773
 ND2
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 ASN A:213 A:213 39.0 0.244 -66.0 162.8 39.0 0.244 0.0 HOH
 6.929
 ND2
 O
ASN B:213 B:213 26.0 0.163 -65.9 163.8 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASN A:186 A:216 18.0 0.113 -79.0 173.5 18.0 0.113 0.0 HOH
 3.475
 ND2
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASN A:186 A:216 30.0 0.188 -76.5 175.6 30.0 0.188 0.0 HOH
 5.301
 CB
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASN A:186 A:211 35.0 0.219 -75.2 165.3 35.0 0.219 0.0 HOH
 3.000
 OD1
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASN A:186 A:211 34.0 0.212 -73.0 163.8 34.0 0.212 0.0 HOH
 3.159
 OD1
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASN A:186 A:211 31.0 0.194 -78.1 168.6 31.0 0.194 0.0 HOH
 3.193
 OD1
 O
ASN B:186 B:211 31.0 0.194 -87.9 165.9 31.0 0.194 0.0 HOH
 7.317
 OD1
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 ASN A:186 A:211 34.0 0.212 -75.5 172.4 34.0 0.212 0.0 IOD
IOD
HOH
 7.609
4.091
3.021
 C
CB
ND2
 I
I
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 ASN A:186 A:211 33.0 0.206 -77.0 172.2 33.0 0.206 0.0 IOD
IOD
HOH
 7.631
4.060
2.997
 C
CB
ND2
 I
I
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASN B:186 A:211 39.0 0.244 -73.6 169.8 39.0 0.244 0.0 HOH
 3.661
 OD1
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASN B:186 A:211 41.0 0.256 -75.3 165.5 41.0 0.256 0.0 HOH
 4.998
 CB
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASN A:186 A:211 34.0 0.212 -77.8 176.1 34.0 0.212 0.0 HOH
 2.805
 ND2
 O
ASN B:186 B:211 33.0 0.206 -74.3 170.3 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASN A:186 B:211 29.0 0.181 -77.6 170.7 NA NA NA
ASN B:186 A:211 33.0 0.206 -78.0 172.8 33.0 0.206 0.0 HOH
 2.997
 ND2
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 ASN A:186 A:211 34.0 0.212 -79.8 174.7 34.0 0.212 0.0 HOH
 2.828
 ND2
 O
ASN B:186 B:211 33.0 0.206 -78.3 174.0 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 ASN A:186 A:216 19.0 0.119 -77.7 179.3 19.0 0.119 0.0 HOH
 4.919
 CB
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 ASN A:187 A:213 30.0 0.188 -56.4 164.7 30.0 0.188 0.0 HOH
 7.234
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ASN A:211 A:211 30.0 0.188 -71.0 172.2