Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93178288 . G A CCDS9904.1:NM_001008530.2:c.623aCt>aTt_NP_001008530.1:p.208T>I Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 THR A:196 A:208 0.0 0.0 E -107.8 160.4 0.0 0.0 0.0
THR B:196 B:208 0.0 0.0 E -111.9 157.5 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:210 A:210 0.0 0.0 E -138.3 140.1 0.0 0.0 0.0 HOH
 6.229
 N
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:210 A:210 0.0 0.0 E -124.9 142.7 0.0 0.0 0.0 HOH
 6.986
 OG1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 THR A:210 A:210 0.0 0.0 E -117.1 157.7 0.0 0.0 0.0 HOH
 6.513
 N
 O
THR B:210 B:210 0.0 0.0 E -136.2 141.5 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:183 A:213 0.0 0.0 E -127.1 148.4 0.0 0.0 0.0 GOL
HOH
 9.685
7.131
 CG2
O
 O2
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:183 A:213 0.0 0.0 E -133.6 142.8 0.0 0.0 0.0 HOH
 6.946
 OG1
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:183 A:208 0.0 0.0 E -125.1 149.2 0.0 0.0 0.0 HOH
 6.300
 N
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:183 A:208 0.0 0.0 E -118.3 147.9 0.0 0.0 0.0 HOH
 6.981
 OG1
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:183 A:208 0.0 0.0 E -125.5 152.4 0.0 0.0 0.0 HOH
 6.875
 O
 O
THR B:183 B:208 0.0 0.0 E -119.7 155.4 0.0 0.0 0.0
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 THR A:183 A:208 0.0 0.0 E -130.7 147.2 0.0 0.0 0.0 IOD
HOH
 9.075
6.132
 OG1
N
 I
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 THR A:183 A:208 0.0 0.0 E -129.6 146.8 0.0 0.0 0.0 IOD
HOH
 9.052
6.094
 OG1
N
 I
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:183 A:208 0.0 0.0 E -131.2 151.3 0.0 0.0 0.0 HOH
 6.300
 N
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:183 A:208 0.0 0.0 E -134.1 155.0 0.0 0.0 0.0 HOH
 7.141
 O
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:183 A:208 0.0 0.0 E -134.5 143.2 0.0 0.0 0.0 HOH
 6.207
 N
 O
THR B:183 B:208 0.0 0.0 E -133.8 145.1 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:183 B:208 0.0 0.0 E -132.3 146.2 NA NA NA
THR B:183 A:208 0.0 0.0 E -133.6 144.7 0.0 0.0 0.0 HOH
 6.340
 N
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 THR A:183 A:208 0.0 0.0 E -133.7 147.3 0.0 0.0 0.0 HOH
 6.180
 N
 O
THR B:183 B:208 0.0 0.0 E -138.8 149.0 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 THR A:183 A:213 0.0 0.0 E -134.8 144.0 0.0 0.0 0.0 HOH
 6.134
 N
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 THR A:184 A:210 0.0 0.0 E -131.7 142.1 0.0 0.0 0.0 HOH
 7.059
 OG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 THR A:208 A:208 0.0 0.0 E -133.6 142.3