Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93179164 . G A CCDS9904.1:NM_001008530.2:c.596cCg>cTg_NP_001008530.1:p.199P>L Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 PRO A:187 A:199 62.0 0.428 -64.4 129.3 62.0 0.428 0.0 NAG
HOH
 4.188
6.350
 CG
CD
 O3
O
PRO B:187 B:199 58.0 0.4 -61.9 135.6 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 PRO A:201 A:201 48.0 0.331 -70.1 161.7 48.0 0.331 0.0 HOH
 3.029
 O
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 PRO A:201 A:201 52.0 0.359 -77.4 161.0 52.0 0.359 0.0 HOH
 2.859
 O
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 PRO A:201 A:201 33.0 0.228 -60.5 154.1 33.0 0.228 0.0 HOH
 2.775
 O
 O
PRO B:201 B:201 46.0 0.317 -68.4 156.6 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 PRO A:174 A:204 55.0 0.379 -77.5 161.5 55.0 0.379 0.0 NAG
NAG
GOL
HOH
 7.030
3.196
5.409
2.705
 C
CG
N
O
 O7
O3
O2
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 PRO A:174 A:204 52.0 0.359 -68.9 157.7 52.0 0.359 0.0 NAG
NAG
HOH
 7.192
3.125
2.788
 C
CG
O
 O7
O3
O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 PRO A:174 A:199 55.0 0.379 -80.7 157.7 55.0 0.379 0.0 NAG
NAG
HOH
 3.307
7.042
2.801
 CG
C
O
 O3
C8
O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 PRO A:174 A:199 59.0 0.407 -78.1 154.5 59.0 0.407 0.0 NAG
NAG
HOH
 3.345
6.958
2.978
 CD
C
O
 O3
C8
O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 PRO A:174 A:199 55.0 0.379 -74.6 154.0 55.0 0.379 0.0 NAG
NAG
HOH
 3.389
7.245
7.250
 CG
C
C
 O3
C8
O
PRO B:174 B:199 52.0 0.359 -76.0 154.8 52.0 0.359 0.0 NAG
NAG
HOH
 3.426
8.029
4.361
 CD
C
CA
 O3
C8
O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 PRO A:174 A:199 42.0 0.29 -71.0 155.9 42.0 0.29 0.0 NAG
NAG
NAG
HOH
 7.311
6.215
7.195
2.743
 C
CD
CG
O
 C8
N2
O7
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 PRO A:174 A:199 40.0 0.276 -70.9 153.3 40.0 0.276 0.0 NAG
NAG
NAG
HOH
 7.191
6.089
7.302
2.716
 C
CD
CG
O
 C8
N2
O7
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 PRO B:174 A:199 55.0 0.379 -77.0 150.1 55.0 0.379 0.0 NAG
NAG
HOH
 3.149
7.392
2.836
 CD
C
O
 O3
C8
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 PRO B:174 A:199 56.0 0.386 -79.8 144.8 56.0 0.386 0.0 NAG
NAG
HOH
 3.264
7.379
2.755
 CG
C
O
 O3
C8
O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 PRO A:174 A:199 37.0 0.255 -66.9 162.5 37.0 0.255 0.0 NAG
NAG
NAG
HOH
 6.524
7.069
6.972
2.684
 CD
CG
C
O
 C1
O7
C8
O
PRO B:174 B:199 57.0 0.393 -74.5 161.7 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 PRO A:174 B:199 56.0 0.386 -79.7 161.7 NA NA NA
PRO B:174 A:199 36.0 0.248 -71.8 162.4 36.0 0.248 0.0 NAG
NAG
NAG
HOH
 6.585
7.211
7.065
2.764
 CD
CG
C
O
 N2
O7
C8
O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 PRO A:174 A:199 37.0 0.255 -69.1 156.8 37.0 0.255 0.0 NAG
NAG
NAG
HOH
 6.512
6.863
7.106
2.789
 CD
CG
C
O
 C1
O7
C8
O
PRO B:174 B:199 38.0 0.262 -77.0 154.4 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 PRO A:174 A:204 42.0 0.29 -69.0 162.2 42.0 0.29 0.0 NAG
NAG
HOH
 7.870
3.213
2.699
 C
CD
O
 C8
O3
O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 PRO A:175 A:201 51.0 0.352 -61.0 147.0 51.0 0.352 0.0 HOH
 2.487
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 PRO A:199 A:199 35.0 0.241 -69.2 148.9