Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93180173 . G A CCDS9904.1:NM_001008530.2:c.538Cga>Tga_NP_001008530.1:p.180R>* Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 ARG A:168 A:180 114.0 0.507 S -98.0 -58.8 114.0 0.507 0.0 HOH
 3.849
 NH1
 O
ARG B:168 B:180 127.0 0.564 S -92.0 -59.8 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 GLN A:182 A:182 73.0 0.406 S -88.9 -45.2 73.0 0.406 0.0 HOH
 4.483
 CA
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 GLN A:182 A:182 49.0 0.272 S -86.6 -43.5 49.0 0.272 0.0 HOH
 2.684
 NE2
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 GLN A:182 A:182 78.0 0.433 S -100.0 -39.8 78.0 0.433 0.0 HOH
 4.219
 O
 O
GLN B:182 B:182 73.0 0.406 S -106.7 -40.1 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 GLN A:155 A:185 93.0 0.517 S -86.2 -44.4 93.0 0.517 0.0 NAG
HOH
 7.246
8.659
 O
O
 O6
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 GLN A:155 A:185 75.0 0.417 S -88.7 -41.6 75.0 0.417 0.0 NAG
HOH
 7.931
5.826
 O
NE2
 O5
O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ARG A:155 A:180 132.0 0.587 S -87.3 -47.0 132.0 0.587 0.0 NAG
HOH
 7.685
2.944
 O
NH1
 O6
O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ARG A:155 A:180 125.0 0.556 S -87.7 -45.1 125.0 0.556 0.0 NAG
HOH
 7.740
3.181
 O
NE
 O6
O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ARG A:155 A:180 107.0 0.476 S -90.6 -45.5 107.0 0.476 0.0 NAG
HOH
 7.198
2.880
 O
NH2
 O6
O
ARG B:155 B:180 134.0 0.596 S -93.3 -39.5 134.0 0.596 0.0 NAG
HOH
 6.588
4.122
 NH2
NE
 C6
O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 ARG A:155 A:180 117.0 0.52 S -84.3 -48.7 117.0 0.52 0.0 NAG
NAG
BMA
HOH
 6.897
5.861
6.926
2.758
 NH2
NH2
NH2
NE
 O6
C3
O2
O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 ARG A:155 A:180 118.0 0.524 S -83.3 -47.0 118.0 0.524 0.0 NAG
NAG
BMA
HOH
 7.169
6.073
6.565
3.088
 NH2
NH2
NH2
NE
 C6
C3
O2
O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ARG B:155 A:180 133.0 0.591 S -87.2 -44.8 133.0 0.591 0.0 NAG
HOH
 7.082
4.611
 NH2
N
 C6
O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ARG B:155 A:180 132.0 0.587 S -85.4 -46.4 132.0 0.587 0.0 NAG
HOH
 7.205
3.588
 NH2
CD
 C6
O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ARG A:155 A:180 124.0 0.551 S -89.4 -44.1 124.0 0.551 0.0 NAG
HOH
 7.157
2.742
 O
NH1
 O6
O
ARG B:155 B:180 135.0 0.6 S -87.6 -47.4 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ARG A:155 B:180 127.0 0.564 S -84.4 -48.9 NA NA NA
ARG B:155 A:180 128.0 0.569 S -86.4 -44.8 128.0 0.569 0.0 NAG
HOH
 7.157
2.813
 O
NH2
 O6
O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 ARG A:155 A:180 97.0 0.431 S -86.9 -42.6 97.0 0.431 0.0 NAG
HOH
 6.199
2.701
 NH2
NH2
 O6
O
ARG B:155 B:180 116.0 0.516 S -88.0 -51.7 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 GLN A:155 A:185 84.0 0.467 S -87.2 -47.1 84.0 0.467 0.0 NAG
HOH
 6.749
2.525
 O
OE1
 O6
O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 GLN A:156 A:182 50.0 0.278 S -125.3 -29.5 50.0 0.278 0.0 HOH
 4.569
 NE2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ARG A:180 A:180 62.0 0.276 S -83.7 -49.8