Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93182497 . C A CCDS9904.1:NM_001008530.2:c.388Ggc>Tgc_NP_001008530.1:p.130G>C Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 GLY A:118 A:130 14.0 0.187 88.8 13.3 14.0 0.187 0.0 HOH
 8.745
 CA
 O
GLY B:118 B:130 12.0 0.16 85.4 9.7 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 GLY A:132 A:132 24.0 0.32 76.2 14.9 24.0 0.32 0.0 HOH
 3.340
 O
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 GLY A:132 A:132 27.0 0.36 74.9 1.1 27.0 0.36 0.0 HOH
 2.692
 O
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 GLY A:132 A:132 21.0 0.28 75.7 12.2 21.0 0.28 0.0
GLY B:132 B:132 26.0 0.347 72.1 10.1 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 GLY A:105 A:135 20.0 0.267 78.7 8.4 20.0 0.267 0.0 HOH
 7.489
 N
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 GLY A:105 A:135 21.0 0.28 60.1 16.7 21.0 0.28 0.0 HOH
 6.969
 N
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 GLY A:105 A:130 22.0 0.293 70.9 10.2 22.0 0.293 0.0 HOH
 3.740
 N
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 GLY A:105 A:130 19.0 0.253 72.7 13.7 19.0 0.253 0.0 HOH
 3.964
 CA
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 GLY A:105 A:130 26.0 0.347 76.8 18.5 26.0 0.347 0.0 HOH
 3.038
 O
 O
GLY B:105 B:130 29.0 0.387 60.4 26.2 29.0 0.387 0.0 HOH
 7.254
 C
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 GLY A:105 A:130 22.0 0.293 75.2 10.8 22.0 0.293 0.0 HOH
 2.878
 O
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 GLY A:105 A:130 22.0 0.293 74.6 8.4 22.0 0.293 0.0 HOH
 2.920
 O
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 GLY B:105 A:130 20.0 0.267 73.9 8.2 20.0 0.267 0.0 HOH
 3.886
 CA
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 GLY B:105 A:130 19.0 0.253 77.2 1.5 19.0 0.253 0.0 HOH
 6.956
 N
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 GLY A:105 A:130 19.0 0.253 71.9 8.2 19.0 0.253 0.0 HOH
 2.874
 O
 O
GLY B:105 B:130 22.0 0.293 65.6 22.7 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 GLY A:105 B:130 22.0 0.293 71.7 8.2 NA NA NA
GLY B:105 A:130 19.0 0.253 72.0 11.0 19.0 0.253 0.0 HOH
 2.760
 O
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 GLY A:105 A:130 18.0 0.24 68.8 7.9 18.0 0.24 0.0 HOH
 2.781
 O
 O
GLY B:105 B:130 19.0 0.253 65.6 -1.4 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 GLY A:105 A:135 20.0 0.267 71.1 6.2 20.0 0.267 0.0 HOH
 2.626
 O
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 GLY A:106 A:132 22.0 0.293 75.2 -3.4 22.0 0.293 0.0 HOH
 8.239
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 GLY A:130 A:130 24.0 0.32 63.3 10.9