Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93182527 . C A CCDS9904.1:NM_001008530.2:c.358Gat>Tat_NP_001008530.1:p.120D>Y Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 ASP A:108 A:120 45.0 0.3 -78.6 77.9 45.0 0.3 0.0 HOH
 4.150
 OD1
 O
ASP B:108 B:120 41.0 0.273 -86.6 77.3 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASP A:122 A:122 53.0 0.353 -89.2 86.6 53.0 0.353 0.0 HOH
 5.314
 O
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASP A:122 A:122 47.0 0.313 -91.0 85.2 47.0 0.313 0.0 HOH
 3.015
 OD2
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 ASP A:122 A:122 54.0 0.36 -88.5 85.5 54.0 0.36 0.0
ASP B:122 B:122 31.0 0.207 -95.1 87.2 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASP A:95 A:125 56.0 0.373 -90.3 80.0 56.0 0.373 0.0 HOH
 3.019
 OD1
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASP A:95 A:125 58.0 0.387 -85.1 80.9 58.0 0.387 0.0 HOH
 5.709
 OD2
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:95 A:120 41.0 0.273 -80.6 76.5 41.0 0.273 0.0 HOH
 3.566
 OD2
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:95 A:120 37.0 0.247 -88.4 82.4 37.0 0.247 0.0 HOH
 3.837
 N
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:95 A:120 41.0 0.273 -83.7 77.7 41.0 0.273 0.0 HOH
 9.069
 C
 O
ASP B:95 B:120 40.0 0.267 -83.3 79.2 40.0 0.267 0.0 HOH
 8.701
 O
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 ASP A:95 A:120 52.0 0.347 -87.9 80.4 52.0 0.347 0.0 HOH
 3.233
 OD2
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 ASP A:95 A:120 55.0 0.367 -85.5 79.7 55.0 0.367 0.0 HOH
 2.969
 OD1
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP B:95 A:120 39.0 0.26 -89.2 72.0 39.0 0.26 0.0 HOH
 3.792
 CB
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP B:95 A:120 37.0 0.247 -91.0 70.1 37.0 0.247 0.0 HOH
 3.011
 OD1
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP A:95 A:120 43.0 0.287 -82.1 73.7 43.0 0.287 0.0 HOH
 3.345
 OD2
 O
ASP B:95 B:120 34.0 0.227 -82.8 76.9 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP A:95 B:120 56.0 0.373 -79.5 77.0 NA NA NA
ASP B:95 A:120 39.0 0.26 -83.4 73.5 39.0 0.26 0.0 HOH
 3.442
 OD2
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 ASP A:95 A:120 51.0 0.34 -88.5 78.3 51.0 0.34 0.0 HOH
 3.506
 OD2
 O
ASP B:95 B:120 55.0 0.367 -88.6 81.4 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 ASP A:95 A:125 42.0 0.28 -98.4 74.9 42.0 0.28 0.0 HOH
 3.342
 OD2
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 ASP A:96 A:122 33.0 0.22 -105.5 93.7 33.0 0.22 0.0 HOH
 3.230
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ASP A:120 A:120 63.0 0.42 -87.1 77.6